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BioLiP
>protein
LKLSAKDIYEKDFEKTMARGYRREEVDAFLDDIIADYQKMADMNNEVVKLSEENHKLKKELEELR

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8e2c:A 65 65 1.0000 1.0000 1.0000 2.80e-41
2 6gpz:A 63 63 0.5231 0.5397 0.5397 1.54e-13 6gp7:B, 6gpz:B
3 6gqn:B 62 59 0.4308 0.4516 0.4746 9.65e-09 6gqn:A
4 4lsy:B 88 65 0.2615 0.1932 0.2615 0.49
5 6w4x:C 375 41 0.2308 0.0400 0.3659 1.5 7ai8:A, 7ai9:A, 2alx:A, 1av8:A, 1av8:B, 2av8:A, 2av8:B, 7bet:A, 1biq:A, 1biq:B, 5ci0:A, 5ci1:A, 5ci2:A, 5ci3:A, 5ci4:A, 5cns:E, 5cns:F, 5cns:G, 5cns:H, 5cnt:E, 5cnt:F, 5cnt:G, 5cnt:H, 5cnu:E, 5cnu:F, 5cnu:G, 5cnu:H, 5cnv:E, 5cnv:F, 5cnv:G, 5cnv:H, 4erm:E, 4erm:F, 4erm:G, 4erm:H, 4erp:E, 4erp:F, 4erp:G, 4erp:H, 1jpr:A, 1jpr:B, 1jqc:A, 1jqc:B, 1mrr:A, 1mrr:B, 1mxr:A, 1mxr:B, 1pfr:A, 1pfr:B, 1pim:A, 1pim:B, 1piu:A, 1piu:B, 1piy:A, 1piy:B, 1piz:A, 1piz:B, 1pj0:A, 1pj0:B, 1pj1:A, 1pj1:B, 1pm2:A, 1pm2:B, 1r65:A, 1r65:B, 1rib:A, 1rib:B, 1rnr:A, 1rnr:B, 1rsr:A, 1rsr:B, 1rsv:A, 1rsv:B, 3uus:E, 3uus:F, 3uus:G, 3uus:H, 6w4x:D, 1xik:A, 1xik:B, 2xof:A, 2xof:B, 1yfd:A, 1yfd:B
6 1mpx:A 614 44 0.2000 0.0212 0.2955 2.3 1mpx:B, 1mpx:C, 1mpx:D
7 8x5i:D 557 31 0.1692 0.0197 0.3548 2.3 8x5i:B
8 7adr:A 473 32 0.2000 0.0275 0.4062 3.2 7adr:D, 7ady:A, 7ady:D, 7aiz:A, 7aiz:D, 6fea:A, 6fea:D, 5n6y:A, 5n6y:D
9 6gnf:B 492 34 0.2154 0.0285 0.4118 3.3
10 6gnf:A 522 34 0.2154 0.0268 0.4118 3.3 6gnf:C
11 2zxi:B 606 24 0.1846 0.0198 0.5000 4.0 2zxh:A, 2zxh:B, 2zxi:A, 2zxi:C, 2zxi:D
12 5klb:A 267 28 0.2000 0.0487 0.4643 5.6 6c1e:A, 6c1e:B, 6c1k:A, 6c1k:B, 6c1m:A, 6c1m:B, 8h9w:A, 6juh:C, 6ke5:A, 6ke5:B, 6ke5:C, 6ke5:D, 6keb:C, 6keb:D, 5klb:B, 5klb:C, 5klb:D, 5klg:D, 5klg:C, 5kls:C, 5kmf:A, 5kmh:A
13 5c0w:K 576 46 0.2154 0.0243 0.3043 6.7 5c0y:B, 5c0y:A, 2hbk:A, 2hbl:A, 2hbm:A, 5k36:J, 4oo1:J, 4wfd:A
14 8ovh:A 400 11 0.1231 0.0200 0.7273 8.2 8ovh:B, 8ovh:C, 8ovh:D
15 3mcx:A 459 59 0.2615 0.0370 0.2881 8.9
16 7x5e:E 101 25 0.1846 0.1188 0.4800 9.2 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
17 8xgc:8 857 57 0.2462 0.0187 0.2807 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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