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BioLiP
>protein
LKEKSWRDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRVKS

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fth:A 68 68 1.0000 1.0000 1.0000 1.08e-40 4fth:B
2 5m7n:B 428 47 0.2647 0.0421 0.3830 1.49e-05
3 5m7o:A 448 45 0.2647 0.0402 0.4000 2.00e-05 4d6y:A, 4d6y:B, 5m7n:A, 5m7o:B, 5m7p:A, 5m7p:B
4 5xxm:A 749 78 0.3971 0.0360 0.3462 0.16 5xxl:A, 5xxl:B, 5xxm:B, 5xxn:A, 5xxn:B, 5xxo:B, 5xxo:A
5 4v8s:AY 376 50 0.2647 0.0479 0.3600 0.76 4v8s:BC
6 7clf:A 335 55 0.2206 0.0448 0.2727 1.2 7clf:B
7 3v97:B 641 40 0.1912 0.0203 0.3250 2.5 3v8v:B
8 4dkl:A 442 53 0.2941 0.0452 0.3774 4.5
9 7yzm:A 422 71 0.2794 0.0450 0.2676 4.6 6eno:A, 7yyl:C, 7yyl:D, 7yyl:A, 7yyl:B, 7yzm:B, 7yzm:C, 7yzm:D, 7yzq:C, 7yzq:D, 7yzq:A, 7yzq:B
10 7vnr:A 333 66 0.2941 0.0601 0.3030 5.2 7vnr:C, 7vnr:E, 7vnr:G
11 8v46:A 412 22 0.1324 0.0218 0.4091 6.5 8ux9:B, 8ux9:C, 8v46:B, 8v47:A, 8v47:B, 8v47:C, 8v48:A, 8v48:B, 8v48:C, 8v48:F, 8v49:A, 8v49:B
12 8k49:T 627 38 0.1471 0.0159 0.2632 7.4 8k42:R, 8k42:S, 8k42:T, 8k42:U, 8k42:V, 8k42:W, 8k49:R, 8k49:S, 8w9p:R, 8w9p:S, 8w9p:T, 8w9p:U, 8w9p:V, 8w9p:W, 8w9q:R, 8w9q:S, 8w9q:T
13 7a0r:C 197 31 0.1324 0.0457 0.2903 8.1 7a0s:C, 7a18:C, 3cf5:C, 3dll:C, 5dm6:C, 5dm7:C, 4io9:C, 4ioa:C, 4ioc:C, 1j5a:K, 5jvg:C, 5jvh:C, 1jzx:K, 1jzy:K, 1jzz:K, 1k01:K, 1nkw:C, 1nwx:C, 1nwy:C, 3pio:C, 3pip:C, 1sm1:C, 4u67:C, 4v49:BC, 4v4a:BC, 4v4g:BF, 4v4g:DF, 4v4g:FF, 4v4g:HF, 4v4g:JF, 4wfn:C, 1xbp:C, 2zjp:C, 2zjq:C, 2zjr:C
14 7tz4:A 530 28 0.1471 0.0189 0.3571 8.7 7tyb:A
15 7r07:F 600 72 0.2647 0.0300 0.2500 9.6 7r06:A, 7r06:F, 7r06:B, 7r06:E, 7r06:C, 7r06:D, 7r07:A, 7r07:B, 7r07:C, 7r07:D, 7r07:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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