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BioLiP
>protein
LKCNKLVPLFYKTCPAGKNLCYKMFMVATPKVPVKRGCIDVCPKSSLLVKYVCCNTDRCN

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bhi:A 60 60 1.0000 1.0000 1.0000 4.85e-38 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
2 7c28:A 65 53 0.3667 0.3385 0.4151 1.58e-07 7c28:B
3 8vy8:B 75 58 0.3833 0.3067 0.3966 2.01e-06 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
4 5mg9:A 65 61 0.3500 0.3231 0.3443 4.45e-06
5 8we8:B 60 54 0.3500 0.3500 0.3889 3.01e-04
6 1v6p:A 62 47 0.2833 0.2742 0.3617 0.004 1v6p:B
7 5ebx:A 62 53 0.2833 0.2742 0.3208 0.028 6ebx:B
8 9avv:G 62 53 0.3333 0.3226 0.3774 0.028 9avv:F, 9awk:F, 9awk:G
9 1lxg:A 71 64 0.3667 0.3099 0.3438 0.22 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
10 5erl:D 258 22 0.2000 0.0465 0.5455 0.53 5ep9:A, 5ep9:B, 5ep9:C, 5ep9:D, 5equ:A, 5equ:B, 5equ:C, 5equ:D, 5erl:A, 5erl:B, 5erl:C
11 7rd6:A 929 23 0.1833 0.0118 0.4783 1.6 7rd7:A, 7rd8:A
12 5epa:A 258 21 0.1667 0.0388 0.4762 1.7 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
13 3jb9:B 904 38 0.1833 0.0122 0.2895 3.8
14 8c07:B 450 27 0.1833 0.0244 0.4074 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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