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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LHERQRYRGLFAALAQTPSEEIAIVRSLSVPLVKTTPVSLPFCLDQTVADNCLTLSGMGYYLGIGGCCPACNAGDGAATS
REALILAFVQQINTIFEHRAFLASLVVLADRHNAPLQDLLAGILGQPELFFVHTILRGGGACDPRLLFYPDPTYGGHMLY
VIFPGTSAHLHYRLIDRMLTACPGYRFVAHVWQSTFVLVVRRNAPTVSAADIYCKMRDISFDGGLMLEYQRLYATFDEFP
PP

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g6d:B 253 252 0.9959 0.9526 0.9563 2.63e-175 8g6d:D, 8g6d:F, 8g6d:H, 8g6d:J, 8g6d:L, 4zxs:B, 4zxs:D
2 7pab:A 415 238 0.5868 0.3422 0.5966 8.88e-97 7pab:C
3 4z3u:B 252 249 0.5702 0.5476 0.5542 6.70e-82 5e8c:A, 5fki:1A, 5fki:1C, 5fki:1E, 5fki:1G, 5fki:1I, 5fki:1K, 5fki:1M, 5fki:1O, 5fki:1Q, 5fki:1S, 5fki:1U, 5fki:1W, 5fki:1Y, 5fki:10, 5fki:12, 5fki:14, 5fki:16, 5fki:18, 5fki:2A, 5fki:2C, 5fki:2E, 5fki:2G, 5fki:2I, 5fki:2K, 5fki:2M, 5fki:2O, 5fki:2Q, 5fki:2S, 5fki:2U, 5fki:2W, 5fki:2Y, 5fki:20, 5fki:22, 5fki:24, 5fki:26, 5fki:28, 5fki:3A, 5fki:3C, 5fki:3E, 5fki:3G, 5fki:3I, 5fki:3K, 4z3u:D
4 5dob:A 237 208 0.1777 0.1814 0.2067 1.88e-04 5d5n:B, 5doc:A, 5doc:B, 5doe:B
5 7t7i:D 242 213 0.1942 0.1942 0.2207 0.001 7t7i:B, 7t7i:H, 7t7i:J
6 7t7i:F 208 167 0.1653 0.1923 0.2395 0.090
7 2air:B 153 98 0.0909 0.1438 0.2245 0.68 2a0f:B, 1acm:B, 1acm:D, 2air:H, 1at1:B, 1at1:D, 2at1:B, 2at1:D, 3at1:B, 3at1:D, 4at1:B, 4at1:D, 5at1:B, 5at1:D, 6at1:B, 6at1:D, 7at1:B, 7at1:D, 8at1:B, 8at1:D, 8atc:B, 8atc:D, 9atc:B, 1d09:B, 1d09:D, 3d7s:B, 3d7s:D, 4e2f:D, 4e2f:B, 4e2f:J, 4e2f:L, 4e2f:H, 4e2f:F, 1ezz:B, 1ezz:D, 4f04:B, 4f04:D, 1f1b:B, 1f1b:D, 4fyv:B, 4fyv:D, 4fyw:B, 4fyw:D, 4fyx:B, 4fyx:D, 4fyy:B, 4fyy:D, 2fzc:B, 2fzc:D, 2fzg:B, 2fzg:D, 2fzk:B, 2fzk:D, 2h3e:B, 2h3e:D, 2hse:B, 2hse:D, 1i5o:B, 1i5o:D, 2ipo:B, 2ipo:D, 4kgv:B, 4kgv:D, 4kgx:B, 4kgx:D, 4kgz:B, 4kgz:D, 4kh0:B, 4kh0:D, 4kh1:B, 4kh1:D, 6kj8:B, 6kj8:D, 6kj8:F, 6kja:B, 6kja:D, 6kja:F, 6kjb:B, 3mpu:B, 3mpu:D, 3mpu:F, 1nbe:B, 1nbe:D, 1q95:G, 1q95:H, 1q95:I, 1q95:J, 1q95:K, 1q95:L, 2qg9:B, 2qg9:D, 2qgf:B, 2qgf:D, 1r0b:G, 1r0b:H, 1r0b:I, 1r0b:J, 1r0b:K, 1r0b:L, 1r0c:B, 1r0c:H, 1raa:B, 1raa:D, 1rab:B, 1rab:D, 1rac:B, 1rac:D, 1rad:B, 1rad:D, 1rae:B, 1rae:D, 1raf:B, 1raf:D, 1rag:B, 1rag:D, 1rah:B, 1rah:D, 1rai:B, 1rai:D, 1sku:D, 1tth:B, 1tth:D, 1tu0:B, 1tu0:D, 1tug:B, 1tug:D, 1xjw:B, 1xjw:D, 1za1:B, 1za1:D, 1za2:B, 1za2:D
8 3rwk:X 493 64 0.0950 0.0467 0.3594 3.5 3sc7:X
9 8j6n:A 390 24 0.0455 0.0282 0.4583 3.5 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L
10 6n8e:A 1332 32 0.0579 0.0105 0.4375 3.6
11 5ah5:A 789 31 0.0579 0.0177 0.4516 3.7 5ah5:B
12 5ch8:A 270 106 0.1157 0.1037 0.2642 4.0
13 4yuu:V1 129 18 0.0372 0.0698 0.5000 7.0 4yuu:v1, 4yuu:V2, 4yuu:v2
14 7n4y:B 2455 29 0.0579 0.0057 0.4828 9.0 7n4y:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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