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BioLiP
>protein
LEVLFQGPLGSEFMLPKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTIRKAIGDLVSQGLLYSVQGGGTFV
A

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d4s:B 83 81 0.9877 0.9639 0.9877 6.31e-53 5d4r:A, 5d4r:B, 5d4s:A, 4egy:A, 4egy:B, 4egz:A, 4egz:B, 4h0e:A, 4h0e:B
2 4wwc:A 213 67 0.3704 0.1408 0.4478 1.37e-17
3 4u0v:A 243 67 0.3704 0.1235 0.4478 2.04e-17 4u0v:B, 4u0w:A, 4u0w:B, 4u0y:A, 4u0y:B, 4u0y:C, 4u0y:D, 4wwc:B
4 7zla:B 458 72 0.2346 0.0415 0.2639 0.001 7pq9:AAA, 7pq9:BBB, 7pq9:CCC, 7pq9:DDD, 7pq9:EEE, 7pq9:FFF, 7pq9:GGG, 7pq9:HHH, 7pq9:III, 7pq9:JJJ, 7zpa:A, 7zpa:B
5 6wfq:C 228 50 0.2099 0.0746 0.3400 0.002 6on4:A, 6on4:B, 6wfq:D, 6wg7:C, 6wg7:D, 6wg7:E, 6wg7:G, 6wg7:F, 6wg7:H
6 7zn5:B 435 65 0.2222 0.0414 0.2769 0.003 7zn5:A
7 2di3:A 231 62 0.1975 0.0693 0.2581 0.005 2di3:B
8 5dv5:A 267 48 0.2099 0.0637 0.3542 0.035 5dv5:B
9 4p9u:E 272 48 0.2099 0.0625 0.3542 0.042 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
10 7u5q:A 217 61 0.2346 0.0876 0.3115 0.048 7u5q:B
11 7dd9:A 1129 53 0.1852 0.0133 0.2830 0.067 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
12 8gr7:A 326 36 0.1728 0.0429 0.3889 0.12 8gr7:B
13 1h9t:A 232 51 0.2222 0.0776 0.3529 0.16 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
14 7sqc:1C 1700 68 0.2346 0.0112 0.2794 0.29 7sqc:1D
15 3tgn:B 146 29 0.1481 0.0822 0.4138 1.0 3tgn:A
16 8c00:t 619 32 0.1481 0.0194 0.3750 1.4 8c01:t, 6rbd:k, 7wtr:CC
17 7wtp:CC 661 32 0.1481 0.0182 0.3750 1.4 6eml:t, 6wdr:k, 7wtq:CC
18 8cbj:k 670 32 0.1481 0.0179 0.3750 1.4 6fai:k, 6y7c:t
19 6za0:A 240 29 0.1481 0.0500 0.4138 2.6 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
20 3iec:B 313 27 0.1358 0.0351 0.4074 2.9 5eak:A, 5eak:B, 3iec:A, 3iec:C, 3iec:D, 5kz8:A, 5kz8:B, 8txy:A, 8txy:B
21 5kz7:A 296 27 0.1358 0.0372 0.4074 3.0 5kz7:B
22 6xzd:CP1 772 45 0.1975 0.0207 0.3556 3.3
23 1sy7:A 698 28 0.1358 0.0158 0.3929 3.4 1sy7:B
24 7qiy:P 75 43 0.1605 0.1733 0.3023 4.3 8auv:I, 8b2l:I1, 7qiz:ZA
25 7uka:A 368 59 0.2346 0.0516 0.3220 4.7
26 2fbh:A 137 45 0.1728 0.1022 0.3111 6.2
27 3i5x:A 509 26 0.1235 0.0196 0.3846 6.9 4db2:C, 4db2:A, 4db2:B, 4db2:D, 4db4:A, 3i5y:A, 3i61:A, 3i62:A, 3sqw:A, 3sqx:A, 4tyn:A, 4tyw:A, 4tyy:A, 4tz0:A, 4tz6:A
28 8d1x:D 469 58 0.1975 0.0341 0.2759 8.7 8d1x:A, 8d1x:B, 8d1x:C, 8d1x:E, 8d1x:F
29 3mkv:A 414 60 0.1975 0.0386 0.2667 9.7 3mkv:B, 3mkv:C, 3mkv:D, 3mkv:E, 3mkv:F, 3mkv:G, 3mkv:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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