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BioLiP
>protein
LETKRSEFGTSIITPEEKLYIKNNVNTPPESILADRDGWKVEISGVKEPRTLTVAELKTLGLVTAATVLQCSGNGRKYFK
DQLTGDQKMSGTPWTVGAAGCVIWSGVPLKAVVDALGGPAEGARFITGTGGEELPAGLDPKLLVVERSVPISNLDNVILA
WEMNGRPLSLAHGGPLRMVVPGYSGVNNIKYVKAVAMTEVETDAKIQKTSYRVHALGEKGSPDQPSVWEQPVKSWITTPH
EAAKAGQVQIAGVAFGGMNACKSVEVSVDGGQTWQEAEFIGPDLGRFAWRVFALSADLARGTYTLVSRATDTEGNVQPEE
TEMNGAGYGHNGWRAPAVKLTVA

The query sequence (length=343) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pw3:A 365 343 0.9971 0.9370 0.9971 0.0 5k3x:A, 5k3x:B, 4pw3:B, 4pw3:C, 4pw3:D, 4pw9:A, 5wa0:A, 5wa0:B, 5wa0:C, 5wa0:D
2 6y0k:AAA 377 354 0.3878 0.3528 0.3757 8.39e-54
3 2blf:A 373 349 0.3353 0.3083 0.3295 6.51e-43 2bpb:A, 2c9x:A, 2ca3:A, 2ca4:A
4 1ogp:A 388 369 0.2945 0.2603 0.2737 4.48e-31 1ogp:B, 1ogp:C, 1ogp:D, 1ogp:E, 1ogp:F
5 1sox:A 463 323 0.2770 0.2052 0.2941 1.54e-22 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
6 2xts:A 389 297 0.2391 0.2108 0.2761 7.11e-21 2xts:C
7 3hbg:A 353 319 0.2682 0.2606 0.2884 1.02e-19
8 2bih:A 453 375 0.2332 0.1766 0.2133 1.13e-13 2bii:A, 2bii:B
9 7rkb:A 146 108 0.0845 0.1986 0.2685 0.007
10 7kos:A 149 92 0.0729 0.1678 0.2717 2.1 7kos:D
11 1gtt:A 421 101 0.0845 0.0689 0.2871 3.0 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
12 1xdq:C 264 114 0.0787 0.1023 0.2368 3.8 1xdq:A, 1xdq:B, 1xdq:D, 1xdq:E
13 8xxn:3B 536 63 0.0525 0.0336 0.2857 5.8 6zon:B, 6zp4:B, 6zvj:B
14 8pj1:1 588 63 0.0525 0.0306 0.2857 6.3 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
15 4c3k:D 101 86 0.0408 0.1386 0.1628 6.5 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
16 3tbd:A 331 37 0.0408 0.0423 0.3784 8.5 3zyg:A, 3zyg:B, 3zyi:B
17 2ebs:B 771 55 0.0525 0.0233 0.3273 9.1 2ebs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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