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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
NIDNKPALS

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tt7:E 89 89 1.0000 1.0000 1.0000 5.17e-63
2 5wam:B 97 79 0.3146 0.2887 0.3544 1.47e-09
3 4tuf:A 346 40 0.1573 0.0405 0.3500 4.4 4tuf:B, 4tuf:C, 4tuf:D
4 2die:A 481 40 0.1685 0.0312 0.3750 5.1
5 3bht:B 262 85 0.2360 0.0802 0.2471 5.1 3bht:D, 3bhu:B, 3bhu:D, 3bhv:B, 3bhv:D, 2c5v:B, 2c5v:D, 2cch:B, 2cch:D, 2cci:B, 2cci:D, 4cfu:D, 4cfv:B, 4cfv:D, 4eoj:B, 4eol:B, 4eom:D, 4eon:B, 4eon:D, 4eoo:B, 4eop:D, 4eoq:B, 1gy3:D, 1h24:B, 1h25:B, 1h26:B, 1h27:B, 1h28:B, 1h28:D, 2iw6:B, 2iw9:B, 2iw9:D, 5lmk:B, 1oi9:B, 1oiu:B, 1oiy:B, 1okv:B, 1okv:D, 1okw:B, 1okw:D, 1ol1:B, 1ol1:D, 1ol2:B, 1ol2:D, 6p3w:B, 6p3w:D, 3qhr:D, 3qhr:B, 3qhw:B, 3qhw:D, 1urc:B, 1urc:D, 2uue:B, 2uue:D, 2v22:B, 2v22:D, 2wev:B, 2wev:D, 2wfy:B, 2wfy:D, 2whb:B, 2whb:D, 2wma:B, 2wmb:B, 2x1n:D
6 6ag0:C 483 74 0.2360 0.0435 0.2838 5.3 6ag0:A, 1hvx:A, 4uzu:A
7 8evb:B 432 41 0.1348 0.0278 0.2927 6.8
8 8etp:C 454 41 0.1348 0.0264 0.2927 6.8 8etp:A, 8etp:B, 8eu3:A, 8eu3:B, 8eu3:C, 8euc:A, 8euc:B, 8euc:C, 8ev8:A, 8ev8:B, 8ev8:C, 8ev9:A, 8ev9:B, 8ev9:C, 8eva:A, 8eva:B, 8eva:C, 8evb:A, 8evb:C, 8evc:A, 8evc:B, 8evc:C
9 4kps:A 324 52 0.1461 0.0401 0.2500 8.1 4kps:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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