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BioLiP
>protein
LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDPVEEGMNHINQDMKEAEKNLKDLGK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rk2:G 77 72 0.9726 0.9221 0.9861 1.33e-44 6wvw:C
2 5n6u:A 811 16 0.1644 0.0148 0.7500 0.98 5n6u:B, 5n6u:C, 5n6u:D
3 6eff:B 206 49 0.1644 0.0583 0.2449 1.1 6eff:A, 6eff:C, 6eff:D
4 8gh8:D 140 32 0.1644 0.0857 0.3750 2.0 8gh8:C
5 4n78:F 156 26 0.1644 0.0769 0.4615 2.0
6 4uwq:A 548 29 0.1370 0.0182 0.3448 3.0 4uwq:D, 4uwq:G, 4uwq:J, 2wdc:A, 2wdd:A, 2wde:A, 2wdf:A
7 5hfi:A 202 36 0.1507 0.0545 0.3056 3.4
8 3qdk:A 546 28 0.1233 0.0165 0.3214 4.4
9 4psw:A 316 37 0.1918 0.0443 0.3784 4.4 1bob:A, 4psx:A, 4psx:D, 7xay:A
10 6efd:A 206 37 0.1370 0.0485 0.2703 5.5 6efc:A, 7kmj:A, 8st6:A, 6x3k:A, 6x3q:A
11 8bal:F 348 39 0.1781 0.0374 0.3333 5.8 8bal:A, 8bal:C, 8bal:D, 8bal:E
12 6vc6:B 440 36 0.1507 0.0250 0.3056 6.6 6vc6:A, 6vc6:C, 6vc6:D
13 5a4g:A 180 36 0.1918 0.0778 0.3889 7.8
14 5k0t:B 468 26 0.1507 0.0235 0.4231 8.1
15 5k0s:C 497 26 0.1507 0.0221 0.4231 9.5 5k0s:A, 5k0s:B, 5k0t:A, 5k0t:C, 4py2:A, 4py2:B, 4py2:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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