Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQR

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4owf:B 86 79 0.9367 0.8605 0.9367 6.38e-44 9azj:A, 9azj:B, 4owf:A, 7tv4:B, 7tv4:D
2 9b0z:A 89 68 0.3671 0.3258 0.4265 1.19e-10 9b0b:A, 9b0b:B, 9b0b:C, 9b0b:D, 9b0z:B, 9b12:C, 9b12:D, 9b12:E, 9b12:F
3 2zpu:A 319 52 0.2405 0.0596 0.3654 0.80 1v71:A, 1wtc:A, 2zr8:A
4 6ahd:1 1048 22 0.1519 0.0115 0.5455 1.1 7abg:u, 7abh:u, 7abi:u, 6ah0:1, 7b0i:C, 7b91:C, 7b9c:C, 8ch6:C, 7dvq:1, 6en4:C, 7evo:1, 6ff4:u, 6ff7:u, 8h6e:2G, 8h6j:2G, 8h6k:2G, 8h6l:2G, 8hk1:1, 8i0p:1, 8i0r:1, 8i0s:1, 8i0t:1, 8i0u:1, 7omf:C, 7onb:C, 7opi:C, 7q3l:A, 7q4o:A, 7q4p:A, 8qo9:B1, 7qtt:C, 6qx9:B1, 8qxd:B1, 8qzs:B1, 8r08:B1, 8r09:B1, 8r0a:B1, 8r0b:B1, 8rm5:B1, 7vpx:1, 6y50:u, 6y5q:u, 8y7e:1, 5z56:1, 5z57:1, 5z58:1, 5zya:C
5 1ksf:X 714 62 0.2405 0.0266 0.3065 2.1 1mbu:A, 1mbu:B, 1mbx:A, 1mbx:B, 1r6b:X, 1r6o:A, 1r6o:B, 1r6q:A, 1r6q:B, 7uiv:B, 7uiv:C, 7uiv:D, 7uiv:E, 7uiv:A, 7uiv:F, 7uiw:A, 7uiw:B, 7uiw:C, 7uiw:D, 7uiw:E, 7uix:B, 7uix:C, 7uix:D, 7uix:E, 7uix:F, 7uix:A, 7uiy:B, 7uiy:C, 7uiy:D, 7uiy:E, 7uiy:A, 7uiy:F, 7uiz:B, 7uiz:C, 7uiz:D, 7uiz:E, 7uiz:A, 7uiz:F, 7uj0:B, 7uj0:C, 7uj0:D, 7uj0:E, 7uj0:A, 7uj0:F, 6uqe:A, 6uqe:B, 6uqe:C, 6uqe:D, 6uqe:E, 6uqe:F, 6uqo:C, 6uqo:D, 6uqo:A, 6uqo:B, 6uqo:E, 6uqo:F, 6w1z:A, 6w1z:B, 6w1z:C, 6w1z:D, 6w1z:E, 6w1z:F, 6w20:A, 6w20:B, 6w20:C, 6w20:D, 6w20:E, 6w20:F, 6w21:A, 6w21:B, 6w21:C, 6w21:D, 6w21:E, 6w21:F, 6w22:A, 6w22:B, 6w22:C, 6w22:D, 6w22:E, 6w22:F, 6w23:A, 6w23:B, 6w23:C, 6w23:D, 6w23:E, 6w23:F, 6w24:A, 6w24:B, 6w24:C, 6w24:D, 6w24:E, 6w24:F
6 6hns:A 443 26 0.1519 0.0271 0.4615 5.4 6hns:B
7 2b3x:A 888 72 0.2658 0.0236 0.2917 6.2 2b3y:A, 2b3y:B
8 6a0f:B 305 44 0.2025 0.0525 0.3636 8.2 6a0f:A, 6a0h:A, 6a0h:B
9 3n75:A 711 32 0.1266 0.0141 0.3125 8.9 3n75:D, 3n75:B, 3n75:E, 3n75:C, 6q7l:A, 6q7l:F, 6q7l:B, 6q7l:C, 6q7l:D, 6q7l:J, 6q7l:E, 6q7l:H, 6q7l:G, 6q7l:I, 6q7l:K, 6q7l:R, 6q7l:L, 6q7l:Q, 6q7l:M, 6q7l:P, 6q7l:N, 6q7l:T, 6q7l:O, 6q7l:S, 6q7m:A, 6q7m:F, 6q7m:B, 6q7m:C, 6q7m:D, 6q7m:J, 6q7m:E, 6q7m:H, 6q7m:G, 6q7m:I, 6q7m:K, 6q7m:R, 6q7m:L, 6q7m:Q, 6q7m:M, 6q7m:P, 6q7m:N, 6q7m:O, 6q7m:S, 6q7m:T

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417