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I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
LDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISR
KFQENALKELK

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6al9:B 91 91 1.0000 1.0000 1.0000 1.73e-60 6al9:A
2 5j6f:A 352 83 0.2637 0.0682 0.2892 0.003 5j6f:B
3 1ecm:B 95 85 0.2747 0.2632 0.2941 0.087 1ecm:A
4 3nvt:A 345 77 0.2308 0.0609 0.2727 0.10 3nvt:B, 3tfc:A, 3tfc:B
5 5gmu:B 87 85 0.2088 0.2184 0.2235 1.7 5gmu:A
6 3ghg:B 401 54 0.1648 0.0374 0.2778 2.1 3bvh:E, 3bvh:B, 3e1i:B, 3e1i:E, 2ffd:E, 2ffd:B, 1fzc:B, 1fzc:E, 1fze:B, 1fze:E, 1fzf:B, 1fzf:E, 1fzg:B, 1fzg:E, 3ghg:E, 3ghg:H, 3ghg:K, 3h32:B, 3h32:E, 2h43:B, 2h43:E, 2hlo:B, 2hlo:E, 2hod:B, 2hod:E, 2hod:H, 2hod:K, 2hpc:B, 2hpc:E, 2hpc:H, 2hpc:K, 3hus:B, 3hus:E, 1lt9:B, 1lt9:E, 1ltj:B, 1ltj:E, 1n86:B, 1n86:E, 2oyh:B, 2oyh:E, 2oyi:B, 2oyi:E, 2q9i:B, 2q9i:E, 1re3:B, 1re3:E, 1re4:B, 1re4:E, 1rf0:B, 1rf0:E, 1rf1:B, 1rf1:E, 2z4e:B, 2z4e:E
7 7sl6:A 819 21 0.0989 0.0110 0.4286 5.0 7mqs:F, 7mqs:E, 7sl1:A, 7sl1:B, 7sl2:A, 7sl2:B, 7sl6:B, 7sl7:A, 7sl7:B
8 5wbj:A 1058 65 0.1978 0.0170 0.2769 5.2 5wbk:A, 5wbl:A
9 3qcp:A 410 52 0.1758 0.0390 0.3077 5.9 3qd9:A, 3qd9:B, 3qd9:C, 3qd9:D
10 8jus:A 335 44 0.1978 0.0537 0.4091 8.9 8jus:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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