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BioLiP
>protein
LDSAIHFLDREDVTKRVLKIVAAFDKVTKEVKADSHFVNDLGLDSLDVVEVVMSLEQEFNVDMSNQDAEKIHTVKDAIDY
FCAHPASM

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8iuf:AB 88 88 1.0000 1.0000 1.0000 1.59e-59 8j9h:AB, 8j9i:AB, 8j9j:AB
2 8iuf:AC 92 87 0.8295 0.7935 0.8391 1.20e-47 8j9h:AC, 8j9i:AC, 8j9j:AC
3 6sga:Fc 84 83 0.4773 0.5000 0.5060 3.25e-24 6sgb:Fc, 6yxy:EK
4 7b0n:U 88 88 0.4432 0.4432 0.4432 2.08e-22 6rfq:Q, 6rfr:Q, 6y79:Q
5 8e73:AB 85 82 0.4318 0.4471 0.4634 4.81e-22
6 8bee:U 87 82 0.4432 0.4483 0.4756 3.18e-21 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
7 7zmb:Q 85 80 0.4091 0.4235 0.4500 2.72e-20 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
8 7ar7:T 84 81 0.4432 0.4643 0.4815 1.56e-19 7ar8:T, 8bq6:T
9 2fac:A 77 75 0.4091 0.4675 0.4800 5.01e-17 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
10 7arc:U 84 82 0.3864 0.4048 0.4146 2.48e-16 7ard:U
11 3gzl:A 81 52 0.3409 0.3704 0.5769 2.56e-16 2fq0:A, 2fq2:A, 3gzm:B
12 2eht:A 77 68 0.3750 0.4286 0.4853 2.61e-16
13 8ba0:U 85 69 0.3523 0.3647 0.4493 1.95e-15 8ba0:T, 8esz:AC
14 2x2b:A 76 71 0.4091 0.4737 0.5070 3.65e-15
15 7ak6:U 88 69 0.3295 0.3295 0.4203 1.53e-14 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
16 8jfh:E 79 52 0.2727 0.3038 0.4615 1.02e-11 8jfn:B
17 2qnw:A 80 51 0.2614 0.2875 0.4510 1.61e-10
18 7b0n:T 81 78 0.3295 0.3580 0.3718 3.76e-10 6gcs:O, 7o6y:O, 6rfq:O, 6rfr:O, 6rfs:O, 6y79:O
19 6lvu:A 78 73 0.3182 0.3590 0.3836 1.91e-09 6lvu:B
20 2koo:A 81 58 0.2727 0.2963 0.4138 1.71e-08 2kop:A, 2koq:A, 2kor:A, 2kos:A
21 2fva:A 82 51 0.2727 0.2927 0.4706 2.81e-08
22 2ll8:A 101 50 0.1705 0.1485 0.3000 7.91e-04
23 6kfu:A 527 56 0.1705 0.0285 0.2679 0.011 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
24 2liw:A 99 51 0.2159 0.1919 0.3725 0.041
25 8hp3:A 298 33 0.1705 0.0503 0.4545 0.078 8hp3:B, 8hp3:C
26 7f2r:B 79 51 0.1705 0.1899 0.2941 0.11
27 7tui:B 2033 27 0.1591 0.0069 0.5185 0.20 6u5v:B, 6u5w:B
28 2k0x:A 86 40 0.1364 0.1395 0.3000 0.44 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
29 7d5s:RO 525 49 0.1932 0.0324 0.3469 0.58 7ajt:US, 6ke6:RO, 6lqp:RO, 6lqu:RO, 7suk:SU, 6zqb:US, 6zqc:US
30 5z06:B 698 33 0.1477 0.0186 0.3939 0.63 5z06:A
31 7puk:A 425 27 0.1477 0.0306 0.4815 2.0 7puj:A, 7puk:C
32 7bc4:B 2054 27 0.1364 0.0058 0.4444 2.5
33 5kp8:B 78 75 0.1705 0.1923 0.2000 2.6
34 4o33:A 417 40 0.1591 0.0336 0.3500 4.6 4axx:A, 3c3a:B, 3c3b:A, 3c3b:B, 3c3c:A, 1hdi:A, 1kf0:A, 5m1r:A, 5m3u:A, 5m6z:A, 5mxm:A, 5np8:A, 4o3f:A, 5o7d:A, 1vjc:A, 1vjd:A, 2wzb:A, 2wzc:A, 2wzd:A, 2x13:A, 2x14:A, 2x15:A, 2xe7:A, 2xe8:A, 2y3i:A, 2y3i:D, 2ybe:A, 2zgv:A, 3zoz:A
35 1qf6:A 641 57 0.2045 0.0281 0.3158 5.4 7cbg:A, 7cbg:B, 7cbh:A, 7cbh:B, 7cbi:A, 7cbi:B, 1evk:A, 1evk:B, 1evl:A, 1evl:B, 1evl:C, 1evl:D, 1fyf:A, 1fyf:B, 8h98:B, 8h98:A, 8h99:A, 8h99:B, 8h9a:A, 8h9b:A, 8h9c:A, 4hwo:A, 4hwo:B, 4hwp:A, 4hwp:B, 4hwr:A, 4hwr:B, 4hws:A, 4hws:B, 1kog:A, 1kog:B, 1kog:C, 1kog:D, 1kog:E, 1kog:F, 1kog:G, 1kog:H, 6l2p:A, 6l2p:B, 6l2q:A, 6l2q:B, 8ou8:D, 8ou8:A, 4p3o:A, 4p3o:B, 4p3p:A, 4p3p:B, 8qic:A, 8qic:D, 1tke:A, 1tkg:A, 1tky:A, 8wia:A, 8wia:B, 8wig:A, 8wig:B, 8wih:A, 8wih:B, 8wii:A, 8wii:B, 8wij:B, 8wij:A, 7wm7:A, 7wm7:B, 7wmf:A, 7wmf:B, 7wmi:A, 7wmi:B
36 8cg6:C 75 54 0.1705 0.2000 0.2778 7.0
37 2kqs:A 97 45 0.1364 0.1237 0.2667 9.0 2asq:A, 8djh:A, 8dji:A, 6jxu:A, 6jxv:A, 6k5t:A, 2las:A, 6uyo:A, 6uyo:C, 6uyp:A, 6uyq:A, 6uyr:A, 6uys:A, 6uys:C, 6uyt:A, 6uyu:A, 6uyu:C, 6uyv:A, 6uyx:C, 6uyx:A, 6uyy:A, 6uyz:A, 6uyz:C, 6v7p:C, 6v7p:A, 6v7q:C, 6v7q:A, 6v7r:C, 6v7r:A, 6v7s:C, 6v7s:A, 4wjn:A, 4wjo:A, 4wjp:A, 4wjp:C, 4wjq:A, 4wjq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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