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BioLiP
>protein
LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPE
ALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSET

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lor:B 154 154 1.0000 1.0000 1.0000 6.02e-112
2 2yp6:A 143 125 0.1818 0.1958 0.2240 0.043 2yp6:B, 2yp6:C, 2yp6:D
3 5oas:A 728 89 0.1494 0.0316 0.2584 0.23 5vfb:A, 5vfb:B
4 4wbr:D 157 128 0.1818 0.1783 0.2188 0.96
5 4qen:A 472 86 0.1429 0.0466 0.2558 1.5 4qeo:A, 4qep:A
6 1h31:B 138 101 0.1818 0.2029 0.2772 1.7 1h31:D, 1h31:F, 1h31:H, 1h32:B, 1h33:B, 2oz1:B, 2oz1:D, 2oz1:F, 2oz1:H
7 1ep3:A 311 82 0.1299 0.0643 0.2439 1.9 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
8 2die:A 481 39 0.0909 0.0291 0.3590 2.6
9 2rem:C 191 27 0.0714 0.0576 0.4074 3.4
10 6slo:A 214 53 0.0974 0.0701 0.2830 9.0 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
11 6n63:A 141 41 0.0909 0.0993 0.3415 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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