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BioLiP
>protein
LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ny2:D 73 70 1.0000 0.9589 1.0000 1.67e-48 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
2 3ny1:A 73 70 0.7714 0.7397 0.7714 4.37e-38 3ny1:B, 5tdc:A, 5tdc:C
3 7mex:A 1737 71 0.4714 0.0190 0.4648 2.77e-19 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
4 7wul:A 70 70 0.4571 0.4571 0.4571 1.77e-17 7wuk:A, 7wum:A, 7wun:A
5 7y70:A 77 59 0.3857 0.3506 0.4576 4.96e-13 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
6 8bja:B 1638 47 0.1571 0.0067 0.2340 0.059
7 8bja:A 1563 47 0.1571 0.0070 0.2340 0.063
8 8p82:A 1596 47 0.1571 0.0069 0.2340 0.063 8p82:B
9 8d4x:B 1669 47 0.1571 0.0066 0.2340 0.063 8c06:A, 8c06:D
10 8e0q:A 1689 47 0.1571 0.0065 0.2340 0.064 8d4x:A, 8e0q:B
11 8ewi:A 1775 47 0.1571 0.0062 0.2340 0.064 8ewi:B, 8ewi:C, 8ewi:D
12 7mf3:D 158 36 0.1857 0.0823 0.3611 0.15 7mf3:E, 6z47:E, 6z47:F
13 8e9b:B 387 23 0.1571 0.0284 0.4783 0.56 8uxw:B, 8uxx:B, 6w17:B, 6w18:B
14 7mju:A 184 26 0.1857 0.0707 0.5000 2.5 5dag:A, 5dah:B, 5dah:A
15 8ge0:A 188 28 0.1857 0.0691 0.4643 3.2 8gdx:A, 8ge0:B, 8ge0:C
16 6f8z:A 715 20 0.1429 0.0140 0.5000 4.3 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C
17 4c2j:D 395 16 0.1000 0.0177 0.4375 8.5 4c2j:A, 4c2j:B, 4c2j:C
18 6kqs:A 620 38 0.1857 0.0210 0.3421 9.1 6kqt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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