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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LADVNLVVGGCTVGALALGRFVFLPFHRASLAKAGMPKQNGMTHLQAGDARAEEASFILKTNDPAGFTVVDVMAWGALGH
AAAFYILATSSLGLDRNPF

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a4p:G 99 99 1.0000 1.0000 1.0000 5.93e-69 6zzx:G, 6zzy:G
2 7yca:G 95 89 0.5556 0.5789 0.6180 1.48e-36
3 6l35:G 98 94 0.5455 0.5510 0.5745 4.42e-35 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
4 7wg5:AG 99 95 0.5253 0.5253 0.5474 7.04e-34 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
5 3lw5:G 95 90 0.5051 0.5263 0.5556 4.80e-32 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
6 8wgh:G 98 94 0.5152 0.5204 0.5426 5.77e-32
7 5zji:G 97 94 0.5455 0.5567 0.5745 6.32e-32
8 8bcv:G 94 91 0.5051 0.5319 0.5495 9.16e-31
9 4y28:G 91 91 0.4646 0.5055 0.5055 3.18e-26
10 8cmo:G 93 90 0.4848 0.5161 0.5333 3.17e-24
11 7zq9:G 95 92 0.4141 0.4316 0.4457 2.15e-19 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 4rku:G 84 88 0.4040 0.4762 0.4545 5.97e-18
13 7zqc:G 80 90 0.3636 0.4500 0.4000 2.85e-16 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
14 6ijo:G 70 90 0.3636 0.5143 0.4000 9.63e-15 7r3k:G
15 6sl5:G 101 95 0.3939 0.3861 0.4105 5.31e-10
16 7dz7:K 86 50 0.2222 0.2558 0.4400 4.61e-05 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
17 8cmo:K 89 29 0.1717 0.1910 0.5862 5.49e-05
18 7a4p:K 86 27 0.1818 0.2093 0.6667 6.35e-05 6zzx:K, 6zzy:K
19 6igz:K 80 29 0.1717 0.2125 0.5862 9.04e-05
20 8htu:K 81 22 0.1515 0.1852 0.6818 3.63e-04 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
21 8wgh:K 83 22 0.1414 0.1687 0.6364 0.001
22 8j6z:K 84 30 0.1515 0.1786 0.5000 0.002 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
23 8bcv:K 88 22 0.1313 0.1477 0.5909 0.002 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
24 7wfd:AK 65 22 0.1313 0.2000 0.5909 0.004 7wfe:BK, 7wg5:AK, 7wg5:BK
25 8j7a:K 56 18 0.1111 0.1964 0.6111 0.10
26 6sl5:K 84 29 0.1616 0.1905 0.5517 0.26
27 7yca:K 87 79 0.2424 0.2759 0.3038 0.32
28 3afl:A 766 15 0.1010 0.0131 0.6667 6.5
29 1e5j:A 302 32 0.1212 0.0397 0.3750 6.8 2a3h:A, 3a3h:A, 4a3h:A, 5a3h:A, 6a3h:A, 8a3h:A, 1h11:A, 1h2j:A, 1h5v:A, 1hf6:A, 1ocq:A, 1qhz:A, 1qi0:A, 1qi2:A, 2v38:A, 1w3k:A, 1w3l:A
30 5odn:D 106 28 0.1111 0.1038 0.3929 8.1 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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