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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTG
KDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIA
AHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKIS
DIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLL
LITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lr7:A 391 390 0.9974 0.9949 0.9974 0.0 4lr7:B, 4lr7:C, 4lr8:A, 4lr8:B, 4lr8:C, 4lr9:A, 4lr9:B, 4lr9:C, 4lra:A, 4lra:B, 4lra:C, 4lrb:A, 4lrb:B, 4lrb:C, 4lrc:A, 4lrc:B, 4lrc:C, 4lrd:A, 4lre:A, 4lre:B, 4lre:C, 4lrf:A, 4lrf:B, 4lrf:C, 3m8w:A, 3m8w:B, 3m8w:C, 3m8y:A, 3m8y:B, 3m8y:C, 3m8z:A, 3m8z:B, 3m8z:C, 3ot9:A, 3ot9:B, 3ot9:C, 3twz:A, 3tx0:A, 3un2:A, 3un2:B, 3un2:C, 3un3:A, 3un3:B, 3un3:C, 3un5:A, 3un5:B, 3un5:C, 3un5:D, 3un5:E, 3un5:F, 3uny:A, 3uny:B, 3uny:C, 3uny:D, 3uny:E, 3uny:F, 3uo0:A, 3uo0:B, 3uo0:C
2 4n7t:A 402 402 0.5923 0.5746 0.5746 5.15e-161 3m7v:A, 3m7v:B, 4n7t:B
3 4nwj:A 504 129 0.1103 0.0853 0.3333 0.003 4my4:A, 4nwx:A, 4qax:A, 7tl8:A
4 2ify:A 508 127 0.0974 0.0748 0.2992 0.021
5 5vpu:A 509 132 0.0949 0.0727 0.2803 0.022
6 5yh3:A 438 93 0.0641 0.0571 0.2688 0.098 5wrs:A, 5wrs:B, 5yh2:A, 5yh2:B, 5yh3:B
7 4ml9:A 276 226 0.1359 0.1920 0.2345 0.79 4ml9:B
8 5dn1:A 240 79 0.0590 0.0958 0.2911 0.81
9 8pv1:CH 627 94 0.0641 0.0399 0.2660 1.5 8i9r:CH, 8i9t:CH, 8i9v:CH, 8i9w:CH, 8i9x:CH, 8i9y:CH, 8i9z:CH, 8ia0:CH, 8pv2:CH, 8pv3:CH, 8pv4:CH, 8pv5:CH, 8pv6:CH, 8pv7:CH, 8pv8:CH, 8pvk:CH, 8pvl:CH
10 6int:A 413 82 0.0590 0.0557 0.2805 1.8 6int:B, 6int:C, 6int:D, 6int:E, 6int:F, 6int:G, 6int:H
11 4js1:A 318 115 0.0795 0.0975 0.2696 3.6 4js2:A, 6qvt:A, 6qvt:B
12 1o98:A 509 129 0.0897 0.0688 0.2713 3.6 1ejj:A, 1eqj:A, 1o99:A
13 6c48:B 54 52 0.0513 0.3704 0.3846 4.5 6c48:E
14 2wtn:B 250 89 0.0692 0.1080 0.3034 5.6 2wtn:A
15 3qck:A 289 29 0.0333 0.0450 0.4483 8.2 3qce:A, 3qce:B, 3qcf:A, 3qcf:B, 3qcg:A, 3qch:A, 3qci:A, 3qcj:A, 3qcl:A, 3qcm:A, 3qcm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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