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BioLiP
>protein
KYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVALSGIAAIVTYGLKGAKDADLPI
TKGPQTTGENGKGGSVRSRL

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d0j:H 100 100 1.0000 1.0000 1.0000 3.99e-71 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
2 6sl5:H 92 91 0.5600 0.6087 0.6154 4.68e-32
3 6zzx:H 94 96 0.5100 0.5426 0.5312 4.23e-28 6zzy:H
4 7yca:H 96 91 0.5000 0.5208 0.5495 4.62e-26
5 6igz:H 88 88 0.4700 0.5341 0.5341 2.59e-25
6 7wfd:AH 95 96 0.3700 0.3895 0.3854 2.95e-16 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
7 6yez:H 93 90 0.3500 0.3763 0.3889 3.45e-16 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
8 8htu:H 95 85 0.3500 0.3684 0.4118 3.41e-15 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
9 4xk8:H 90 91 0.3300 0.3667 0.3626 1.13e-12 4xk8:h
10 5zji:H 95 50 0.2400 0.2526 0.4800 2.81e-10 8bcv:H, 8bcw:H
11 8wgh:H 90 77 0.3100 0.3444 0.4026 2.52e-09
12 2c5w:B 385 34 0.1100 0.0286 0.3235 1.2 2c6w:B, 2zc5:B, 2zc5:D, 2zc6:B, 2zc6:D
13 7oi6:y 331 51 0.1900 0.0574 0.3725 3.0 8pk0:t
14 7q3y:A 1201 18 0.0900 0.0075 0.5000 5.2 5am8:A, 5am8:B, 5am8:C, 5am8:D, 5am9:A, 5am9:B, 5am9:C, 5am9:D, 5ama:A, 5ama:B, 5ama:C, 5ama:D, 5amb:A, 5amb:B, 5amc:A, 5amc:B, 4aph:A, 4apj:A, 3bkk:A, 3bkl:A, 4bxk:A, 4bxk:B, 4bzr:A, 4bzs:A, 4bzs:B, 4c2n:A, 4c2o:A, 4c2p:A, 4c2q:A, 4c2r:A, 2c6f:A, 2c6f:B, 2c6n:A, 2c6n:B, 4ca5:A, 4ca6:A, 4ca6:B, 6en5:A, 6en5:B, 6en5:C, 6en5:D, 6en6:A, 6en6:B, 6en6:C, 6en6:D, 6f9r:A, 6f9r:B, 6f9t:A, 6f9u:A, 6f9v:A, 6f9v:B, 6h5w:A, 6h5x:A, 6h5x:B, 2iul:A, 2iux:A, 3l3n:A, 3nxq:A, 3nxq:B, 1o86:A, 1o8a:A, 2oc2:A, 7q24:B, 7q24:A, 7q25:B, 7q25:A, 7q26:B, 7q26:A, 7q27:A, 7q28:A, 7q29:A, 7q49:A, 7q4d:A, 7q4d:B, 7q4e:A, 8qfx:C, 8qfx:B, 8qfx:A, 8qfx:D, 8qhl:B, 8qhl:A, 6qs1:A, 6qs1:B, 6tt1:A, 6tt1:B, 6tt3:A, 6tt3:B, 6tt4:A, 6tt4:B, 4ufa:A, 4ufa:B, 4ufb:A, 4ufb:B, 4ufb:C, 4ufb:D, 1uze:A, 1uzf:A, 2xy9:A, 2xyd:A, 2xyd:B, 2ydm:A, 7z6z:B, 7z6z:A, 7z70:A, 6zpq:A, 6zpq:B, 6zpq:C, 6zpq:D, 6zpt:A, 6zpt:B, 6zpt:C, 6zpt:D, 6zpu:A
15 7kb1:A 428 57 0.1600 0.0374 0.2807 5.4 7kb1:B, 7kb1:C, 7kb1:D
16 7y4i:A 822 73 0.2200 0.0268 0.3014 5.8 8dti:A, 8dti:B
17 6ldo:A 381 37 0.1300 0.0341 0.3514 6.8 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F
18 2v2f:F 366 34 0.1000 0.0273 0.2941 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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