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BioLiP
>protein
KVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDV

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gad:i 450 43 0.9767 0.0933 0.9767 2.17e-22 4c7o:A, 4c7o:C, 5gag:i, 5gah:i, 5nco:i, 7o9g:A, 7o9i:A, 2xkv:C, 2xxa:A, 2xxa:C
2 5gaf:i 398 43 0.9767 0.1055 0.9767 8.82e-22 1dul:A, 1hq1:A, 3lqx:A, 2pxb:A, 2pxd:A, 2pxe:A, 2pxf:A, 2pxk:A, 2pxl:A, 2pxp:A, 2pxq:A, 2pxt:A, 2pxu:A, 2pxv:A
3 2j28:9 430 43 0.9767 0.0977 0.9767 1.07e-21 5aka:5
4 7o5b:g 403 43 0.5581 0.0596 0.5581 9.38e-09 7o9f:A, 7o9f:C, 7o9f:B, 4ue4:C
5 3ndb:B 420 39 0.5116 0.0524 0.5641 8.64e-07 2v3c:C, 2v3c:D, 4xco:D
6 4xco:C 157 39 0.5116 0.1401 0.5641 9.30e-07
7 7epk:A 426 39 0.5349 0.0540 0.5897 1.01e-06
8 3dm5:A 416 41 0.4651 0.0481 0.4878 1.37e-05 3dm5:B
9 1qzw:A 432 33 0.4651 0.0463 0.6061 1.62e-05 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
10 7uea:U 364 32 0.2558 0.0302 0.3438 0.60 3bsd:A, 3eni:A, 3eni:C, 8gwa:1, 8gwa:2, 8gwa:3, 8gwa:4, 8gwa:5, 8gwa:6, 5h8z:A, 5h8z:C, 6m32:E, 6m32:F, 6m32:G, 7uea:V, 7uea:W, 7ueb:U, 7ueb:V, 7ueb:W, 7ueb:X, 7ueb:Y, 7ueb:Z, 7z6q:E, 7z6q:F, 7z6q:G, 7z6q:H, 7z6q:I, 7z6q:J
11 3qo8:A 441 22 0.2326 0.0227 0.4545 1.4 3qo7:A
12 3o0n:A 607 32 0.2558 0.0181 0.3438 4.5 1xjm:B
13 6mez:B 359 33 0.2093 0.0251 0.2727 4.9 4bcl:A, 3eoj:A, 6mez:A, 3vdi:A
14 1xje:A 627 32 0.2558 0.0175 0.3438 5.5 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
15 7b6b:A 346 20 0.1860 0.0231 0.4000 7.4 7b6b:B
16 8wm7:D 257 41 0.2326 0.0389 0.2439 7.5 8w9m:D
17 5gja:A 299 23 0.2558 0.0368 0.4783 9.3 5gj9:A, 5gj9:B, 5gja:B, 5gja:C, 5gja:D, 5gja:E, 5gja:F, 5gja:G, 5gja:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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