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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KVLTIKSCNIHSGIGIRPHAQIELEYQGKIHKEISEGDGGYDAFMNALTKITNRLGISIPKLIDYEVRIPPGGKTDALVE
TRITWNKTFKTMGVHPDQTVAAVHATEKMLNQILQ

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3f6h:B 125 121 1.0000 0.9200 0.9504 1.04e-80 3f6g:B, 3f6g:A, 3f6h:A
2 6qud:A 837 70 0.2000 0.0275 0.3286 0.45
3 7wf3:C 328 60 0.1826 0.0640 0.3500 0.53 2a79:A, 3eau:A, 3eb3:A, 3eb4:A, 6ebk:A, 6ebk:C, 6ebk:E, 6ebk:G, 6ebl:A, 6ebl:C, 6ebl:E, 6ebl:G, 7ej1:A, 7ej1:C, 7ej1:E, 7ej1:G, 7ej2:A, 7ej2:C, 7ej2:E, 7ej2:G, 1exb:A, 4jta:A, 4jta:P, 4jtc:A, 4jtc:G, 4jtd:A, 4jtd:G, 3lnm:A, 3lnm:C, 3lut:A, 1qrq:A, 1qrq:B, 1qrq:C, 1qrq:D, 2r9r:A, 2r9r:G, 7sit:A, 7sit:C, 7siz:A, 7siz:C, 7wf3:G, 7wf3:I, 7wf3:M, 7wf4:G, 7wf4:I, 7wf4:M, 7wf4:o, 5wie:A, 5wie:G, 1zsx:A
4 6ii7:A 355 71 0.1652 0.0535 0.2676 1.1
5 8ity:V 361 74 0.1652 0.0526 0.2568 1.3 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
6 1d3y:B 290 74 0.1739 0.0690 0.2703 1.6 1d3y:A
7 7nit:D 1253 70 0.1913 0.0176 0.3143 1.8 5dmy:A, 5dmy:B, 5dmy:C, 7nit:A, 7nit:B, 7nit:C, 7nit:E, 7nit:F, 6qub:A, 6qub:B, 6quc:A, 6quc:B
8 4fm4:A 206 64 0.1304 0.0728 0.2344 3.3 4fm4:C, 4fm4:E, 4fm4:G, 4fm4:I, 4fm4:K, 4fm4:M, 4fm4:O, 4zgd:A, 4zgd:C, 4zgd:E, 4zgd:G, 4zgd:I, 4zgd:K, 4zgd:M, 4zgd:O, 4zge:A, 4zge:C, 4zge:E, 4zge:G, 4zge:I, 4zge:K, 4zge:M, 4zge:O, 4zgj:A, 4zgj:C, 4zgj:E, 4zgj:G, 4zgj:I, 4zgj:K, 4zgj:M, 4zgj:O
9 3h0d:A 155 79 0.1913 0.1419 0.2785 6.1 3h0d:B
10 7myl:B 158 42 0.1304 0.0949 0.3571 7.6 5ecc:A, 5ecc:B, 5ecx:A, 5ecx:B, 7myl:A, 7myl:C, 7myl:D, 7myl:E, 7myl:F, 7reg:A, 7reg:B, 7rgj:A, 7rgj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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