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BioLiP
>protein
KTVPQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDD
SIEDLGE

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6vpq:A 87 87 1.0000 1.0000 1.0000 1.52e-58 6vpq:B, 6vpq:C, 6vpq:E, 6vpq:F, 5vyc:l1, 5vyc:l2, 5vyc:l3, 5vyc:l4, 5vyc:l5, 5vyc:l6
2 7ase:V 97 67 0.2299 0.2062 0.2985 0.033
3 4pu6:B 131 28 0.1379 0.0916 0.4286 0.43
4 2qmu:C 132 41 0.1034 0.0682 0.2195 0.58 5jb3:8
5 5jb3:1 83 58 0.2299 0.2410 0.3448 0.73 5jbh:1
6 4bts:AF 89 64 0.2069 0.2022 0.2812 0.93 4bts:BF, 4bts:CF, 4bts:DF, 4v5o:AF, 4v5o:BF
7 5zcy:A 83 62 0.2299 0.2410 0.3226 1.2
8 6f5u:B 131 59 0.1839 0.1221 0.2712 2.5 6f6i:B, 6f6n:B, 6f6s:B, 8f87:B, 6g95:B, 6g9b:B, 6hro:B, 6hs4:B, 5jq7:B, 5jqb:B, 7lyd:B, 7lyy:B, 7m2d:B, 6nae:B, 7ssq:B, 7ssr:B
9 5y6q:C 748 38 0.1724 0.0201 0.3947 3.4
10 5olk:A 395 28 0.1379 0.0304 0.4286 6.1 5olk:B, 5olk:C, 5olk:D, 6sf5:A, 6sf5:B
11 6kbw:A 446 37 0.1264 0.0247 0.2973 8.1 6kbw:B
12 8thm:B 462 55 0.2184 0.0411 0.3455 8.4 8thm:A, 8thm:C, 8thm:D, 8thm:F, 8thm:E
13 3lya:A 318 70 0.1034 0.0283 0.1286 8.5
14 6jyg:D 307 24 0.1264 0.0358 0.4583 9.6 6jyg:A, 6jyg:B, 6jyg:C, 6jyg:E, 6jyg:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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