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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK
VSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQ
PKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEER
QGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1h5s:B 291 289 0.9155 0.8935 0.8997 0.0 1h5r:A, 1h5r:B, 1h5r:C, 1h5r:D, 1h5s:A, 1h5s:D, 1h5s:C, 1h5t:A, 1h5t:D, 1h5t:B, 1h5t:C, 1iim:A, 1iim:B, 1iin:A, 1iin:B, 1iin:C, 1iin:D, 1mp3:A, 1mp3:B, 1mp4:A, 1mp4:B, 1mp5:A, 1mp5:B, 1mp5:C, 1mp5:D, 3pkp:A, 3pkp:B, 3pkp:C, 3pkp:D, 3pkp:I, 3pkp:J, 3pkp:K, 3pkp:L, 3pkq:A, 3pkq:B, 3pkq:C, 3pkq:D
2 4b2x:B 302 286 0.7500 0.7053 0.7448 2.27e-162 4arw:A, 4arw:B, 4arw:C, 4arw:D, 4asj:A, 4asj:B, 4asj:C, 4asj:D, 4asy:A, 4asy:B, 4asy:C, 4asy:D, 4b2w:A, 4b2w:B, 4b2w:C, 4b2w:D, 4b2x:A, 4b2x:C, 4b2x:D, 4b3u:A, 4b3u:B, 4b3u:C, 4b3u:D, 4b42:A, 4b42:B, 4b42:C, 4b42:D, 4b4b:A, 4b4b:B, 4b4b:C, 4b4b:D, 4b4g:A, 4b4g:B, 4b4g:C, 4b4g:D, 4b4m:A, 4b4m:B, 4b4m:C, 4b4m:D, 4b5b:A, 4b5b:B, 4b5b:C, 4b5b:D, 5fts:A, 5fts:B, 5fts:C, 5fts:D, 5ftv:A, 5ftv:B, 5ftv:C, 5ftv:D, 5fu0:A, 5fu0:B, 5fu0:C, 5fu0:D, 5fu8:A, 5fu8:B, 5fu8:C, 5fu8:D, 5fuh:A, 5fuh:B, 5fuh:C, 5fuh:D, 1fxo:A, 1fxo:C, 1fxo:B, 1fxo:D, 1fxo:E, 1fxo:H, 1fxo:F, 1fxo:G, 5fye:A, 5fye:B, 5fye:C, 5fye:D, 1g0r:A, 1g0r:B, 1g0r:C, 1g0r:D, 1g0r:E, 1g0r:G, 1g0r:H, 1g1l:A, 1g1l:C, 1g1l:B, 1g1l:D, 1g1l:E, 1g1l:H, 1g1l:F, 1g1l:G, 1g23:A, 1g23:B, 1g23:C, 1g23:D, 1g23:E, 1g23:F, 1g23:G, 1g23:H, 1g2v:A, 1g2v:C, 1g2v:B, 1g2v:D, 1g2v:E, 1g2v:G, 1g2v:F, 1g2v:H, 1g3l:A, 1g3l:C, 1g3l:B, 1g3l:D, 6t37:A, 6t37:B, 6t37:C, 6t37:D, 6t38:A, 6t38:B, 6t38:C, 6t38:D, 6tqg:A, 6tqg:B, 6tqg:C, 6tqg:D, 3zlk:A, 3zlk:B, 3zlk:C, 3zlk:D, 3zll:A, 3zll:B, 3zll:C, 3zll:D
3 6n0u:A 295 287 0.7289 0.7017 0.7213 9.47e-159 6n0u:B, 6n0u:C, 6n0u:D
4 5ify:A 293 287 0.7113 0.6894 0.7038 1.70e-157 5ify:B, 5ify:C, 5ify:D, 5ify:E, 5ify:F
5 4ho9:A 294 284 0.6831 0.6599 0.6831 9.11e-149 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
6 1mc3:A 291 286 0.6514 0.6357 0.6469 3.09e-134 1mc3:B
7 1lvw:A 295 286 0.6092 0.5864 0.6049 1.94e-129 1lvw:B, 1lvw:C, 1lvw:D
8 6b5e:B 286 285 0.5986 0.5944 0.5965 3.59e-127 6b5e:A, 6b5e:C, 6b5e:D, 6b5e:E, 6b5e:F, 6b5e:G, 6b5e:H, 6b5k:A, 6b5k:B
9 3hl3:A 246 232 0.3697 0.4268 0.4526 1.97e-60 4ecm:A
10 2ggq:A 401 270 0.2465 0.1746 0.2593 3.45e-22 5z09:A, 5z09:B, 5z09:C, 5z09:D
11 3juk:A 265 259 0.2465 0.2642 0.2703 1.32e-21 3juk:B, 3juk:C, 3juk:D
12 5i1f:A 290 231 0.2148 0.2103 0.2641 5.89e-16
13 8f73:E 281 276 0.2359 0.2384 0.2428 6.72e-15 8f73:A, 8f73:B, 8f73:C, 8f73:D, 8f73:F, 8f73:G, 8f73:H
14 4y7u:A 224 232 0.2218 0.2812 0.2716 1.70e-14 4y7v:A
15 8b6d:A 291 247 0.2148 0.2096 0.2470 5.60e-14 8b68:A, 8b6d:B
16 5ve7:A 282 274 0.2394 0.2411 0.2482 2.30e-13
17 2ux8:G 288 267 0.2465 0.2431 0.2622 3.63e-13 2ux8:B, 2ux8:C, 2ux8:D, 2ux8:E, 2ux8:F
18 7whs:A 366 256 0.2007 0.1557 0.2227 5.55e-13 7whs:B, 7whs:C, 7whs:D, 7whs:E, 7whs:F, 7wht:A, 7wht:B, 7wht:C, 7wht:D, 7wht:E, 7wht:F
19 7x8k:B 367 233 0.1972 0.1526 0.2403 9.79e-12 7x8k:A, 7x8k:D
20 6k8d:A 290 234 0.1972 0.1931 0.2393 1.08e-10 6ikz:B, 6k8d:B, 6k8d:C, 6k8d:D, 6knj:A, 6knj:B, 6knl:A, 6knl:B
21 7d72:K 360 250 0.1937 0.1528 0.2200 4.19e-10 7d72:I, 7d72:E, 7d72:F, 7d72:G, 7d72:H, 7d72:J, 7d72:L, 7d73:E, 7d73:F, 7d73:G, 7d73:I, 7d73:J, 7d73:K, 7d73:L, 7d73:H, 7d74:E, 7d74:F, 7d74:G, 7d74:H, 7d74:I, 7d74:J, 7d74:K, 7d74:L
22 2pa4:B 299 237 0.2113 0.2007 0.2532 5.51e-09 2pa4:A, 2pa4:C, 2pa4:D
23 2ux8:A 255 133 0.1268 0.1412 0.2707 3.07e-07 2ux8:H
24 1jyl:A 228 51 0.0880 0.1096 0.4902 1.99e-06 1jyl:B, 1jyl:C, 1jyl:D
25 4jd0:A 245 111 0.1021 0.1184 0.2613 9.21e-05
26 6jly:E 414 66 0.0845 0.0580 0.3636 2.24e-04 6jly:F, 6jlz:E, 6jlz:F
27 6jq8:A 225 177 0.1444 0.1822 0.2316 5.44e-04
28 1wvc:A 254 52 0.0669 0.0748 0.3654 7.74e-04 1tzf:A
29 7d72:A 407 195 0.1655 0.1155 0.2410 0.002 7d72:B, 7d72:C, 7d72:D, 7d73:A, 7d73:B, 7d73:C, 7d73:D, 7d74:A, 7d74:D, 7d74:B, 7d74:C
30 6jlz:I 430 72 0.0634 0.0419 0.2500 0.006
31 6r8u:A 425 282 0.2359 0.1576 0.2376 0.012 5l6s:C, 5l6s:G, 5l6s:I, 5l6s:L, 5l6v:A, 5l6v:E, 5l6v:G, 5l6v:H, 5l6v:J, 5l6v:K, 5l6v:N, 5l6v:B, 5l6v:C, 5l6v:D, 5l6v:F, 5l6v:L, 5l6v:M, 5l6v:O, 5l6v:P, 6r8b:D, 6r8b:B, 6r8b:A, 6r8b:C, 6r8u:B, 6r8u:D, 6r8u:C, 6shj:D, 6shj:A, 6shj:B, 6shj:C, 6shn:D, 6shn:C, 6shq:A, 6shq:D, 6shq:C, 6shq:B, 6si8:A, 6si8:B, 6si8:D, 6si8:C
32 5l6v:I 400 188 0.1690 0.1200 0.2553 0.018
33 6xhq:A 237 52 0.0704 0.0844 0.3846 0.024 6xhq:B, 6xhs:B, 6xhs:E, 6xht:A, 6xht:B, 6xht:E, 6xht:F
34 3rsb:B 185 66 0.0669 0.1027 0.2879 0.069 3rsb:A, 3rsb:C, 3rsb:D
35 2x65:A 334 108 0.0951 0.0808 0.2500 0.087 2x5z:A, 2x5z:B, 2x60:A, 2x60:B, 2x65:B
36 4e1k:A 450 208 0.1761 0.1111 0.2404 0.098 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
37 1vpa:A 221 55 0.0669 0.0860 0.3455 0.11 1vpa:B
38 1hm8:A 458 216 0.1866 0.1157 0.2454 0.20 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
39 7v1l:B 221 97 0.0880 0.1131 0.2577 0.45 7v6p:A
40 4fce:A 441 49 0.0563 0.0363 0.3265 0.58
41 6pd2:C 616 51 0.0599 0.0276 0.3333 1.0 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
42 7yh3:D 157 43 0.0528 0.0955 0.3488 1.1 7yh3:A, 7yh3:B, 7yh3:C
43 5odc:A 653 80 0.0915 0.0398 0.3250 1.3 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
44 2oi6:B 452 216 0.1796 0.1128 0.2361 1.7 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B
45 5tew:A 333 21 0.0387 0.0330 0.5238 2.0
46 1yp3:C 435 163 0.1303 0.0851 0.2270 4.1 1yp2:A, 1yp2:B, 1yp2:C, 1yp2:D, 1yp3:A, 1yp3:B, 1yp3:D, 1yp4:A, 1yp4:B, 1yp4:C
47 1wm1:A 313 30 0.0423 0.0383 0.4000 5.7 1x2b:A, 1x2e:A
48 8chd:A 461 59 0.0599 0.0369 0.2881 7.3 8chd:B
49 6kse:A 607 29 0.0387 0.0181 0.3793 9.9 6kse:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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