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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KTLEELATERGMRMTEQRRVIARILEDSEDHPDVEELYRRSVKVDAKISISTVYRTVKLFEDAGIIARHDFRDGRSRYET
VPEEHHDHLIDLKTGTVIEFRSPEIEALQERIAREHGFRLVDHRLELYGVPLK

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fd6:A 135 133 1.0000 0.9852 1.0000 9.56e-93 5fd6:B, 5fd6:C, 5fd6:D
2 4rb3:C 136 130 0.6466 0.6324 0.6615 1.38e-60 4raz:A, 4raz:B, 4rb1:A, 4rb1:B, 4rb2:C, 4rb2:D, 4rb3:D
3 8j6w:A 145 120 0.3985 0.3655 0.4417 1.91e-31
4 2w57:A 131 122 0.3684 0.3740 0.4016 1.53e-27 2w57:B
5 6d57:B 151 124 0.3609 0.3179 0.3871 4.05e-25 6d57:A, 4ets:A, 4ets:B
6 6h1c:B 134 119 0.3459 0.3433 0.3866 2.94e-24 6h1c:A, 1mzb:A
7 5nhk:B 132 121 0.3233 0.3258 0.3554 1.54e-21 5nbc:A, 5nbc:B, 5nbc:C, 5nbc:D, 5nhk:A, 5nhk:C, 5nhk:D
8 2fe3:B 143 126 0.2932 0.2727 0.3095 1.90e-20 3f8n:A, 3f8n:B, 2fe3:A, 2rgv:A, 2rgv:B
9 2o03:A 129 125 0.3083 0.3178 0.3280 6.12e-19
10 2xig:C 150 120 0.2857 0.2533 0.3167 1.76e-18 2xig:A, 2xig:B, 2xig:D
11 7vo0:G 131 118 0.2782 0.2824 0.3136 2.05e-14 3mwm:A, 3mwm:B, 7vo0:H, 7vo0:K, 7vo0:L, 7vo0:N, 7vo0:M, 7vo9:G, 7vo9:H, 7vo9:M, 7vo9:N, 7vpd:M, 7vpd:N, 7vpz:M, 7vpz:N, 7x74:G, 7x74:H, 7x74:M, 7x74:N, 7x75:G, 7x75:H, 7x75:K, 7x75:L, 7x75:M, 7x75:N, 7x76:G, 7x76:H, 7x76:M, 7x76:N
12 6dk4:A 135 114 0.2406 0.2370 0.2807 6.80e-11 6dk4:B
13 4lmy:B 157 122 0.1880 0.1592 0.2049 3.39e-07 4i7h:A, 4i7h:B, 4lmy:A
14 5nl9:A 146 107 0.2105 0.1918 0.2617 3.89e-06 5nl9:B
15 3eyy:A 133 110 0.2331 0.2331 0.2818 4.60e-05 3eyy:B
16 7ne9:AAA 120 116 0.1955 0.2167 0.2241 0.009 7ne9:BBB, 7ne9:CCC, 7ne9:DDD
17 7dh7:C 150 142 0.2406 0.2133 0.2254 0.12 7dh7:A, 7dh7:B, 7dh7:D, 7dh8:A
18 3mvd:L 394 73 0.1579 0.0533 0.2877 0.65 3mvd:K
19 6tlk:A 289 29 0.0827 0.0381 0.3793 1.2 1lua:A, 1lua:B, 1lua:C, 6tge:A, 6tge:C, 6tge:B, 6tge:D, 6tge:F, 6tge:E, 6tge:G, 6tge:I, 6tge:H, 6tge:J, 6tge:L, 6tge:K, 6tge:M, 6tge:O, 6tge:N, 6tge:P, 6tge:R, 6tge:Q, 6tge:S, 6tge:U, 6tge:T, 6tge:V, 6tge:X, 6tge:W, 6tlk:B, 6tlk:C, 6tlk:D, 6tlk:E, 6tlk:F, 6tm3:A
20 6s6t:E 472 55 0.1504 0.0424 0.3636 1.3 6s6s:G, 6s6s:E, 6s6s:F, 6s6s:H, 6s6t:F, 6s6t:G, 6s6u:G, 6s6u:H, 6s6u:I, 6s6u:J, 6s6x:G, 6s6x:H, 6s6x:I, 6s6x:J, 6s6x:K, 6s6x:L, 2vdc:G, 2vdc:H, 2vdc:I, 2vdc:J, 2vdc:K, 2vdc:L
21 8f9x:A 230 21 0.0827 0.0478 0.5238 1.3 8f9x:B, 8f9x:C, 8f9x:D, 8f9x:E, 8f9x:F, 8f9x:G, 8f9x:H, 8f9x:I, 8f9x:J
22 4gp2:A 342 87 0.1805 0.0702 0.2759 1.7 4gp1:A, 4gp2:B
23 6r38:A 331 107 0.1579 0.0634 0.1963 1.8 5qt4:A, 5qt5:A, 5qt6:A, 5qt7:A, 5qt8:A, 5qt9:A, 5qta:A, 5qte:A, 5qtf:A, 5qtg:A, 5qth:A, 5qti:A, 5qtj:A, 5qtk:A, 6r37:A, 6r39:A, 6sii:A
24 7b0h:F 762 107 0.2256 0.0394 0.2804 2.9 7b07:A, 7b08:A, 7b0f:A, 7b0g:A, 7b0h:E, 1qqc:A, 5vu8:A, 2vwj:A, 2xhb:A
25 6tgh:A 410 39 0.1203 0.0390 0.4103 3.1 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
26 4egu:A 118 66 0.1429 0.1610 0.2879 3.5 4egu:B
27 6ep2:K 204 38 0.0902 0.0588 0.3158 4.8 6ep0:A, 6ep0:B, 6ep2:A, 6ep2:B, 6ep2:C, 6ep2:D, 6ep2:E, 6ep2:F, 6ep2:G, 6ep2:H, 6ep2:I, 6ep2:J, 6ep2:L, 6ep5:A, 6ep5:B, 6ep5:C, 6ep5:D, 6ep5:E, 6ep5:F
28 7nkg:D 565 41 0.1128 0.0265 0.3659 5.3 7nkg:A, 7nkg:G, 7nkg:J
29 3owa:C 587 34 0.0902 0.0204 0.3529 6.9 3owa:A, 3owa:B, 3owa:D
30 7qep:N5 93 45 0.1053 0.1505 0.3111 8.9
31 4osp:A 252 49 0.1278 0.0675 0.3469 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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