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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KSYVLKFLRGQLPEDLKDVNGALGCLYGTLPDVDEFGQFVISPDVVNSFHQFGYVKMPIPVLDHQQIDKLADEVNELANN
VEHHPKTERLYATSLADLTGGPLFFCQGQWRAAWGMHDLIYLPTITVAASQILNNSLVRLWYDEVFMKAARTGPCVPWQQ
NYARWQHTKPVNHVTVMIALDTMNKDRGAPCLVPGSHRWREGGLLPPVSYDPTKDEAHQLNTIWEIINEEEGEMLMDTPP
VTVDLRRGEALLIHPLTLFATHGNRSLDAVRCCFIHYMGEKTYAVQNGPLLPHTTKFQADAMIQGPFYPVVFDPA

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fni:14 315 315 1.0000 1.0000 1.0000 0.0 8fnc:14, 8fnf:14, 8fnk:14
2 5erl:D 258 156 0.1492 0.1822 0.3013 0.010 5ep9:A, 5ep9:B, 5ep9:C, 5ep9:D, 5equ:A, 5equ:B, 5equ:C, 5equ:D, 5erl:A, 5erl:B, 5erl:C
3 5epa:A 258 281 0.1937 0.2364 0.2171 0.060 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
4 4bvx:A 203 63 0.0603 0.0936 0.3016 0.31
5 7etl:A 294 84 0.0698 0.0748 0.2619 0.33 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
6 7dzz:B 268 82 0.0667 0.0784 0.2561 0.76 7dt0:A, 7dt0:B, 7dt0:C, 7dt0:D, 7dt0:E, 7dt0:F, 7dt0:G, 7dzz:A, 7e00:A, 7e00:B, 7e01:A, 7e06:A, 7e06:B, 7e07:A, 7e07:B, 7e08:A, 7e09:A, 8h7v:A, 8h7v:B, 8h7y:A, 8h7y:B, 8h81:A, 8h85:A
7 7vbq:B 271 36 0.0444 0.0517 0.3889 2.3
8 6tqe:A 634 53 0.0635 0.0315 0.3774 2.5 6tqe:B, 6tqf:A, 6tqf:B
9 7vbq:A 276 26 0.0349 0.0399 0.4231 3.8
10 5dap:A 288 76 0.0635 0.0694 0.2632 5.0 5daq:A, 5dav:A, 5daw:A, 5dax:A, 6eoz:A, 6jzm:B, 6k0e:B, 6k0f:B, 6k30:B, 6kd9:B, 6kd9:F, 5oa4:A, 5oa7:A, 5oa8:A, 7olk:A, 7oll:A, 7olm:A, 7olo:A, 7olp:A, 7olq:A, 7olr:A, 7olt:A, 5y7r:B, 5y7t:B
11 7q72:B 502 37 0.0413 0.0259 0.3514 6.0
12 1i7q:B 192 42 0.0508 0.0833 0.3810 7.5 1i7q:D
13 5ybl:B 273 38 0.0476 0.0549 0.3947 8.4 5ybl:A, 5ybl:C, 5ybl:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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