Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQ
NGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVEN
VDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRT
GVRPA

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rke:A 272 245 1.0000 0.9007 1.0000 9.12e-175 4f6t:A, 6gu5:A, 6guj:A, 6gwb:A, 6gwv:A, 6gwv:P, 6gx4:A, 6h6w:A, 6h73:A, 6h74:A, 6h8b:A, 6h8h:A, 4ndo:A, 4ndp:A, 4ndq:A, 4ndr:A, 5o5w:A, 2ogx:A, 6ris:A, 6rj4:A, 6rj4:C, 6rj4:E, 6rkd:A, 6rkd:C, 6rkd:E, 6rkd:G, 6rkd:I, 6rkd:K, 6rke:C, 6rke:E, 6rke:G, 6rke:I, 6rke:K, 6yt3:A, 7z5j:A, 7z5j:C, 7z5j:E, 7z5j:I, 7z5j:G, 7z5j:K, 7zqq:A, 7zr4:A, 7zse:A
2 6yt3:B 376 239 0.4327 0.2819 0.4435 8.08e-54 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
3 2j4j:F 226 236 0.2449 0.2655 0.2542 2.72e-07 2j4j:A, 2j4j:E, 2j4j:B, 2j4j:D, 2j4j:C, 2j4k:A, 2j4k:B, 2j4k:D, 2j4k:E, 2j4k:F, 2j4l:A, 2j4l:B, 2j4l:C, 2j4l:D, 2j4l:E, 2j4l:F, 2j4l:G, 2j4l:I, 2j4l:J, 2j4l:K, 2j4l:L
4 2j4k:C 206 232 0.2286 0.2718 0.2414 6.61e-06 2j4l:H
5 2bmu:B 226 162 0.1796 0.1947 0.2716 1.68e-05 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
6 7lnu:A 239 102 0.1265 0.1297 0.3039 4.72e-04 7lnt:A, 7lnx:A
7 7lnu:B 261 109 0.1184 0.1111 0.2661 8.46e-04 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
8 8u0k:A 247 98 0.1265 0.1255 0.3163 8.84e-04 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
9 3nwy:B 231 137 0.1592 0.1688 0.2847 0.10 7bes:A, 7bes:B, 7bes:C, 7bix:A, 7bix:C, 7bix:B, 7bix:E, 7bix:D, 7bix:G, 7bix:I, 7bix:H, 7bix:K, 7bix:J, 7bl7:B, 7bl7:A, 7bl7:C, 7bl7:F, 7bl7:D, 7bl7:E, 7bl7:I, 7bl7:K, 7bl7:J, 7bl7:H, 7bl7:L, 7bl7:G, 3nwy:A, 3nwy:D, 3nwy:C, 3nwy:E, 3nwy:F
10 7wx3:B 258 249 0.2490 0.2364 0.2450 0.65 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
11 2jjx:A 244 82 0.1020 0.1025 0.3049 1.1 2jjx:B, 2jjx:C
12 4v6i:AQ 136 29 0.0490 0.0882 0.4138 1.5 7a1g:H, 7b7d:G, 8bqd:G, 8bqx:G, 8cah:H, 8cas:I, 8cbj:R, 8ccs:t, 8cdl:t, 8cdr:t, 8ceh:t, 8cf5:t, 8cg8:t, 8cgn:t, 8civ:t, 8cku:t, 8cmj:t, 5dat:C7, 5dat:c7, 5dc3:C7, 5dc3:c7, 5dge:C7, 5dge:c7, 5dgf:C7, 5dgf:c7, 5dgv:C7, 5dgv:c7, 6eml:C, 8eub:BR, 8evp:BR, 8evq:BR, 8evr:BR, 8evs:BR, 8evt:BR, 8ewb:BR, 8ewc:BR, 6fai:R, 5fci:C7, 5fci:c7, 5fcj:C7, 5fcj:c7, 6fyx:R, 6fyy:R, 6gq1:AH, 6gqb:AH, 6gqv:AH, 6gsn:R, 6hhq:S, 6hhq:c7, 5i4l:C7, 5i4l:c7, 6i7o:G, 6i7o:Gb, 8i7j:R, 5it7:R, 5it9:R, 3j6x:17, 3j6y:17, 3j77:17, 3j78:17, 3j80:R, 3j81:R, 3jam:R, 3jap:R, 5juo:OB, 5jup:OB, 5jus:OB, 5jut:OB, 5juu:OB, 8k2d:SR, 8k82:SR, 5lyb:C7, 5lyb:c7, 5m1j:R2, 5mc6:G, 5mei:c7, 5mei:S, 7mpi:BR, 7mpj:BR, 7n8b:BR, 5ndg:C7, 5ndg:c7, 5ndv:C7, 5ndv:c7, 5ndw:C7, 5ndw:c7, 7nrc:SG, 7nrd:SG, 5obm:C7, 5obm:c7, 5on6:c7, 5on6:S, 7osa:eS17, 7osm:eS17, 6q8y:G, 6rbd:R, 6rbe:R, 7rr5:SR, 8rw1:R, 6s47:BS, 8s8d:R, 8s8e:R, 8s8f:R, 8s8g:R, 8s8h:R, 8s8i:R, 8s8j:R, 6snt:R, 6sv4:G, 6sv4:Gb, 6sv4:Gc, 6t4q:SR, 6t7i:SR, 6t7t:SR, 6t83:Rb, 6t83:s, 5tbw:S, 5tbw:c7, 6tb3:G, 5tga:C7, 5tga:c7, 5tgm:C7, 5tgm:c7, 6tnu:G, 4u3m:C7, 4u3m:c7, 4u3n:C7, 4u3n:c7, 4u3u:C7, 4u3u:c7, 4u4n:C7, 4u4n:c7, 4u4o:C7, 4u4o:c7, 4u4q:C7, 4u4q:c7, 4u4r:C7, 4u4r:c7, 4u4u:C7, 4u4u:c7, 4u4y:C7, 4u4y:c7, 4u4z:C7, 4u4z:c7, 4u50:C7, 4u50:c7, 4u51:C7, 4u51:c7, 4u52:C7, 4u52:c7, 4u53:C7, 4u53:c7, 4u55:C7, 4u55:c7, 4u56:C7, 4u56:c7, 4u6f:C7, 4u6f:c7, 4uer:V, 6uz7:R, 4v88:AR, 4v88:CR, 4v8y:AR, 4v8z:AR, 4v92:BR, 6wdr:R, 6woo:RR, 6xiq:AH, 6xir:AH, 6y7c:R, 6z6j:SR, 6z6k:SR, 6zce:S, 7zpq:AR, 7zrs:AR, 6zu9:I, 7zuw:AR, 7zux:DR, 6zvi:z, 7zw0:sG
13 3ll9:B 249 81 0.1184 0.1165 0.3580 2.2 3ll9:A
14 5yei:C 397 31 0.0571 0.0353 0.4516 2.6 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
15 3lkk:B 238 81 0.0857 0.0882 0.2593 3.8 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
16 4a7x:C 234 62 0.0857 0.0897 0.3387 4.7 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E
17 5u75:A 144 34 0.0490 0.0833 0.3529 4.9
18 3ek5:A 241 110 0.1347 0.1369 0.3000 5.8 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
19 2bne:B 238 111 0.1429 0.1471 0.3153 6.1 2bnd:A, 2bnd:B, 2bne:A, 2bnf:A, 2bnf:B, 2v4y:A, 2v4y:E, 2v4y:F, 2v4y:B, 2v4y:D, 2v4y:C
20 7ura:A 432 101 0.1347 0.0764 0.3267 8.4 7urc:A, 7urd:A, 7ure:A
21 6hp2:A 297 29 0.0449 0.0370 0.3793 8.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218