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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRIAIVGAGQSGLQLGLGLLAAGYEVTMFSNRTGEDIRRGKVMSSQCMFDTSLQIERDLGLDHWASDCPTVDGIGLAVPH
PEQKGAKVIDWAARLNASAQSVDQRLKIPAWMDEFQKKGGELVFKDAGIDELEACTQSHDLTLVASGKGEISKLFERDAH
KSPYDKPQRALALTYVKGMAPREPFSAVCMNLIPGVGEYFVFPALTTTGPCEIMVFEGVPGGPMDCWADVKTPEEHLARS
KWILDTFTPWEAERCKDIELTDDNGILAGRFAPTVRKPVATLPSGRKVLGLADVVVLNDPITGQGSNNAAKCADTYLKSI
LARGDGAADAAWMQQTFDRYWFGYAQWVTQWTNMLLAPPPPHVLNLLGSAGAVPPLASAFANGFDDPRTFFPWFADAAES
ERYIATCAAVA

The query sequence (length=411) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7z94:A 413 411 0.9976 0.9927 0.9976 0.0 7z4x:A, 7z97:A, 7z98:A, 7z99:A, 7zca:A
2 5ts5:A 483 40 0.0438 0.0373 0.4500 0.33 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
3 7e0d:A 604 41 0.0487 0.0331 0.4878 0.38 7e0c:A, 2e1m:A, 2e1m:B, 2e1m:C, 8jpw:A
4 5vj7:A 462 30 0.0341 0.0303 0.4667 0.61
5 3kkj:A 328 52 0.0438 0.0549 0.3462 0.65 3kkj:B, 5krq:A, 5krq:B, 4zcc:A, 4zcc:B, 4zcc:C, 4zcc:D, 4zcd:A, 4zcd:B
6 5jca:L 471 30 0.0341 0.0297 0.4667 0.66 5jfc:L
7 3h8f:A 497 203 0.1241 0.1026 0.2512 0.69 3h8f:B, 3h8f:C, 3h8f:D, 3h8f:E, 3h8f:F, 3h8g:F, 3h8g:A, 3h8g:B, 3h8g:C, 3h8g:D, 3h8g:E
8 1gpj:A 399 90 0.0560 0.0576 0.2556 0.74
9 5nmx:D 409 29 0.0341 0.0342 0.4828 0.77 5nmw:A, 5nmw:B, 5nmw:C, 5nmw:D, 5nmx:A, 5nmx:B, 5nmx:C
10 1reo:A 484 40 0.0414 0.0351 0.4250 0.80 1tdk:A, 1tdn:A, 1tdo:A
11 8gsm:G 439 30 0.0316 0.0296 0.4333 0.97 8gsm:I
12 3kve:A 484 40 0.0414 0.0351 0.4250 0.97 3kve:B, 3kve:C, 3kve:D
13 1f8r:A 483 40 0.0414 0.0352 0.4250 1.7 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
14 8er0:A 371 60 0.0438 0.0485 0.3000 1.9 8er0:B, 8er1:A, 6wg9:A, 6wg9:B
15 1ps9:A 671 29 0.0316 0.0194 0.4483 2.4
16 8azw:c 233 51 0.0389 0.0687 0.3137 2.6 8b2l:c3, 7qiw:J, 7qiz:J
17 2e5v:A 472 30 0.0341 0.0297 0.4667 3.1 2e5v:B
18 7rk0:B 262 30 0.0365 0.0573 0.5000 3.3 7rk0:A, 7rk0:C, 7rk0:D
19 1sez:A 465 29 0.0341 0.0301 0.4828 3.5 1sez:B
20 2gv8:A 442 34 0.0414 0.0385 0.5000 3.6 2gv8:B, 2gvc:A, 2gvc:B, 2gvc:D, 2gvc:E, 1vqw:A, 1vqw:B
21 8odw:A 612 33 0.0316 0.0212 0.3939 3.8 8odw:B
22 5z2g:A 477 36 0.0365 0.0314 0.4167 3.9 5z2g:B
23 7r81:J1 236 47 0.0341 0.0593 0.2979 5.7
24 8weq:C 394 36 0.0365 0.0381 0.4167 6.3 8weq:A, 8weq:B
25 2bi7:A 383 32 0.0341 0.0366 0.4375 6.7 2bi8:A, 3gf4:A, 3gf4:B, 3inr:A, 3inr:B, 3int:A, 3int:B, 3kyb:A, 3kyb:B, 1wam:A
26 7mfm:I 490 30 0.0341 0.0286 0.4667 7.2 7mfm:J, 7mft:I
27 7er7:A 207 30 0.0389 0.0773 0.5333 7.6 7er6:A, 7er6:B, 7er7:B, 7er8:A, 7er8:B, 7er9:A, 7er9:B, 7era:A, 7era:B, 7erb:A, 7erb:B, 7erb:C, 7erb:D, 7erc:A, 7erc:B, 7erd:A, 7erd:B, 7ere:A, 7ere:B, 7ere:C, 7ere:D, 1hdo:A, 1he2:A, 1he3:A, 1he4:A, 1he5:A, 5oog:A, 5ooh:A, 6opl:A
28 4v7e:CG 237 51 0.0365 0.0633 0.2941 7.7 8ip8:AA, 8ipa:AA, 8ipb:AA, 8jiv:CG, 4v3p:LH
29 6dll:B 398 36 0.0365 0.0377 0.4167 8.2 6dll:A, 6dll:C, 6dll:D
30 2whd:B 319 55 0.0365 0.0470 0.2727 9.3 2whd:A
31 7al4:D 524 61 0.0535 0.0420 0.3607 10.0 7al4:C, 7al4:B, 7al4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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