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BioLiP
>protein
KRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIVRRVQGGQFEHVGKTPHSSHKKIA

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gqd:E 59 59 1.0000 1.0000 1.0000 8.76e-40
2 8wtc:B 100 49 0.3729 0.2200 0.4490 2.94e-12 8wtb:B, 8wtb:D, 8wtc:D
3 8fkp:SS 235 23 0.1864 0.0468 0.4783 0.20 8fkq:SS, 8fkr:SS, 8fks:SS
4 8fky:SS 628 23 0.1864 0.0175 0.4783 0.21 8fkt:SS, 8fku:SS, 8fkv:SS, 8fkw:SS, 8fkx:SS
5 1gws:A 503 38 0.2542 0.0298 0.3947 0.72 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
6 2ydc:A 217 41 0.2881 0.0783 0.4146 2.0 4wcc:A, 4wda:A, 4wdb:A, 4wdf:A, 4wdg:A, 4wfr:A, 2ydb:A, 2ydd:A, 2yoz:A, 2yp0:A, 2ypc:A, 2ype:A, 2yph:A, 2yq9:A, 3zbr:A, 3zbr:B, 3zbs:A, 3zbz:A
7 3f29:B 520 23 0.1525 0.0173 0.3913 2.7 3d1i:A, 3d1i:B, 3f29:A, 3fo3:A, 3fo3:B, 3gm6:A, 3gm6:B, 4l38:A, 4l38:B, 4l3x:A, 4l3x:B, 4l3y:A, 4l3y:B, 4l3z:A, 4l3z:B, 3lg1:A, 3lg1:B, 3lgq:A, 3lgq:B, 3mmo:A, 3mmo:B, 2ot4:A, 2ot4:B, 3owm:A, 3owm:B, 4q0t:A, 4q0t:B, 4q17:A, 4q17:B, 4q1o:A, 4q1o:B, 4q4u:A, 4q4u:B, 4q5b:A, 4q5b:B, 4q5c:A, 4q5c:B, 3rkh:A, 3rkh:B, 3s7w:A, 3s7w:B, 3sce:A, 3sce:B, 3uu9:A, 3uu9:B, 2zo5:A, 2zo5:B
8 1sp3:A 436 44 0.2542 0.0344 0.3409 3.6
9 1i8q:A 814 30 0.1695 0.0123 0.3333 3.7 1lxm:A
10 6uz7:f 44 28 0.1695 0.2273 0.3571 4.0
11 3sxq:A 519 23 0.1525 0.0173 0.3913 4.1 3sxq:B, 3ttb:A, 3ttb:B
12 6fyx:f 74 28 0.1695 0.1351 0.3571 4.6 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
13 4ccv:A 115 22 0.1525 0.0783 0.4091 4.7
14 6w1n:B 3719 16 0.1186 0.0019 0.4375 5.8 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
15 5tte:B 442 30 0.1864 0.0249 0.3667 7.4 7b5m:H, 2m9y:A, 1wd2:A
16 7b5l:H 423 30 0.1864 0.0260 0.3667 7.4 7b5n:H, 4kc9:A, 5udh:A
17 4kbl:A 395 30 0.1864 0.0278 0.3667 8.0 4kbl:B, 5udh:B
18 8t2g:A 333 24 0.1525 0.0270 0.3750 8.3 8t2g:B, 8uzd:A, 8uzd:B
19 2b7r:A 568 26 0.1695 0.0176 0.3846 8.5 2b7s:A, 1e39:A, 1jrx:A, 1jrx:B, 1jry:A, 1jry:B, 1jrz:A, 1jrz:B, 1kss:A, 1ksu:A, 1ksu:B, 1lj1:A, 1lj1:B, 1m64:A, 1m64:B, 1p2e:A, 1p2h:A, 1q9i:A, 1qjd:A, 1y0p:A
20 6hrh:A 429 24 0.1525 0.0210 0.3750 8.7 6hrh:B, 5qqq:B, 5qqq:A, 5qqr:B, 5qqr:A, 5qqs:B, 5qqs:A, 5qqt:B, 5qqt:A, 5qqu:B, 5qqu:A, 5qqv:B, 5qqv:A, 5qqw:B, 5qqw:A, 5qqx:B, 5qqx:A, 5qqy:B, 5qqy:A, 5qqz:B, 5qqz:A, 5qr0:B, 5qr0:A, 5qr1:B, 5qr1:A, 5qr2:B, 5qr2:A, 5qr3:B, 5qr3:A, 5qr4:B, 5qr4:A, 5qr5:B, 5qr5:A, 5qr6:B, 5qr6:A, 5qr7:B, 5qr7:A, 5qr8:B, 5qr8:A, 5qr9:B, 5qr9:A, 5qra:B, 5qra:A, 5qrb:B, 5qrb:A, 5qrc:B, 5qrc:A, 5qrd:B, 5qrd:A, 5qre:B, 5qre:A, 5qt3:B, 5qt3:A
21 8hkj:G 401 28 0.1864 0.0274 0.3929 8.8 8hkj:I
22 8hkj:B 430 28 0.1864 0.0256 0.3929 8.8 8hkj:A, 8hkj:C, 8hkj:D, 8hkj:E, 8hkj:F, 8hkj:H, 8hkj:J, 8hkj:K, 8hkj:L
23 5x4z:I 113 41 0.2203 0.1150 0.3171 9.2 6a5l:I, 6a5o:I, 6a5p:I, 6a5r:I, 6a5t:I, 6a5u:I, 8h0v:I, 8h0w:I, 8he5:I, 6inq:I, 6ir9:I, 6j4w:I, 6j4x:I, 6j4y:I, 6j4z:I, 6j50:I, 6j51:I, 8jh2:I, 8jh3:I, 8jh4:I, 7wbv:I, 7wbw:I, 7wbx:I, 5x4z:U, 5x50:I, 5x51:I, 5x51:U, 7xn7:I, 5xog:I, 5xon:I, 7xse:I, 7xsx:I, 7xsz:I, 7xt7:I, 7xtd:I, 7xti:I, 8yfq:I, 8yfr:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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