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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQLQLAMHNSKAASSTRIFQALPRKLRRRTASHNVRRIPKRMRNRALREMRKSDKAHGLNAKQLYKARMSIKLLRLASKS
TSMKLSMPPEVTSSNCHVRQKIKTLKRMIKESSTANPNIKLLNNRMGSYDCTGVNELAPIPKGRVKYTKRQKHFAWLPTH
IWNAKRSHMMKRWGYQMVWAPTQKCFKLTHRLGGDTCSSDGALCMDSSYIGTIIVKDKSNDSEGDFLKSIIGKLTAERAN
LRKYREGQVLFQGLIYSFNEENGEDSTKPLGPCDVFWVQKDTAIIRLHPSIYTQVFNILLQHKEKLTVQDCRYSLASVTL
KGAKALESLASCLRSTEYSKSFEQFKMVSMITDHNALPQRCTFAFEAIDPRHLAAPKKLNDSQRKTVNSDDILSLHENYP
QDEINAVFNELCDPESRTQSYNNQNTLKEISARRYKLLTATPNSINKTTVPFKESDDPSIPLVIIRRLKTRDWIVVLPWF
WLLPLWHLLNRIPRMYHIGLRQFQQIQYENKQLYFPDDYPFTQLGYIENSFYKKEASKTKWDRKPMGKRINFEKIKDIHN
TKLPAYSGEIGDFFSSDWRFLQILRNGIDYLQRNDKTLELMDSKKTGQQGVRDINCVNDVLEFCKDYEAKTKAMSLSIEE
NIPVALCKNRKCQFSSSFSLTFFPRCIIAVSCTLLERGHPKDNARIYQVPEKDLEHWLQLAKGVYRPNGRKDHDLKIPLP
EVHDLIGFITSGTYHLNCGNGMGIGFIDHHAAIRQPTRYVLIRNVGTNTYRLGEWSKISV

The query sequence (length=780) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c79:B 793 780 0.9821 0.9660 0.9821 0.0 6agb:B, 6ah3:B, 7c7a:B, 6w6v:B
2 6ahr:B 774 169 0.0615 0.0620 0.2840 2.43e-08 6ahu:B
3 6ahr:B 774 51 0.0256 0.0258 0.3922 1.93e-05 6ahu:B
4 6ahr:B 774 346 0.0987 0.0995 0.2225 0.021 6ahu:B
5 5ady:I 141 77 0.0282 0.1560 0.2857 0.53 7abz:I, 5afi:I, 5aka:I, 7bl2:I, 7bl3:I, 7bl5:I, 6bu8:11, 7bv8:J, 6by1:CI, 6by1:DI, 6c4i:J, 7cpj:I, 4csu:I, 7d6z:I, 7d80:h, 3deg:H, 6dnc:M, 8fiz:BL, 8fzd:J, 8fze:J, 8fzf:J, 8fzg:J, 8fzh:J, 8fzi:J, 8fzj:J, 8g7p:J, 8g7q:J, 5gad:J, 5gae:J, 5gaf:J, 5gag:J, 5gah:J, 6gwt:I, 6gxm:I, 6gxn:I, 6gxo:I, 6gxp:I, 5h5u:J, 6hrm:I, 6i0y:I, 6i7v:DJ, 6i7v:CJ, 5iqr:I, 5it8:CJ, 5it8:DJ, 3j0d:G, 2j28:I, 3j5l:I, 5j5b:CJ, 5j5b:DJ, 3j7z:I, 5j7l:CJ, 5j7l:DJ, 3j8g:I, 5j88:CJ, 5j88:DJ, 5j8a:CJ, 5j8a:DJ, 3j9y:I, 3j9z:LE, 5j91:CJ, 5j91:DJ, 3ja1:LK, 3jbv:i, 3jcd:I, 3jce:I, 3jcj:H, 3jcn:I, 5jc9:CJ, 5jc9:DJ, 7jsz:i, 5jte:BI, 7jt3:i, 5ju8:BI, 7k50:i, 7k51:i, 7k52:i, 7k53:i, 7k54:i, 7k55:i, 5kcr:1K, 5kcs:1K, 5kps:I, 5kpv:H, 5kpw:H, 5kpx:H, 5l3p:K, 6lkq:Z, 7lv0:i, 5lza:I, 5lzb:I, 5lzc:I, 5lzd:I, 5lze:I, 5lzf:I, 7m5d:I, 5mdv:I, 5mdw:I, 5mdy:I, 5mdz:I, 7n1p:LK, 7n2c:LK, 7n2v:LK, 5nco:J, 5np6:g, 5nwy:V, 7nwt:I, 5o2r:I, 6o9j:6, 6o9k:I, 7oj0:9, 8p16:I, 8p17:I, 8p18:I, 8peg:k, 8phj:6, 6pj6:Q, 7pjs:I, 7pjt:I, 7pju:I, 7pjv:I, 7pjw:I, 7pjx:I, 7pjy:I, 7pjz:I, 8pkl:k, 6q97:I, 6q98:I, 6q9a:I, 7qg8:V, 7qgh:V, 7qgn:V, 7qgr:V, 8qk7:I, 6s0k:J, 7sa4:I, 7ss9:i, 7ssd:i, 7ssl:i, 7ssn:i, 7sso:i, 7ssw:i, 7st2:i, 7st6:i, 7st7:i, 7tos:L11, 4u1u:BI, 4u1u:DI, 4u1v:BI, 4u1v:DI, 4u20:BI, 4u20:DI, 4u24:BI, 4u24:DI, 4u25:BI, 4u25:DI, 4u26:BI, 4u26:DI, 4u27:BI, 4u27:DI, 5u4i:J, 6u48:CJ, 5u9f:11, 5u9g:11, 7ug7:LK, 8upo:Y, 8upr:Y, 8uql:Y, 8uqm:Y, 8uqp:Y, 8ur0:Y, 8urh:Y, 8uri:Y, 8urx:Y, 8ury:Y, 4uy8:I, 5uyk:11, 5uyl:11, 5uym:11, 5uyn:11, 5uyp:11, 5uyq:11, 4v4h:BI, 4v4h:DI, 4v4q:BI, 4v4q:DI, 4v4v:BG, 4v4w:BG, 4v50:BI, 4v50:DI, 4v52:BI, 4v52:DI, 4v53:BI, 4v53:DI, 4v54:BI, 4v54:DI, 4v55:BI, 4v55:DI, 4v56:BI, 4v56:DI, 4v57:BI, 4v57:DI, 4v5b:AI, 4v5b:CI, 4v5h:BI, 4v5y:BI, 4v5y:DI, 4v64:BI, 4v64:DI, 4v65:B5, 4v66:B5, 4v69:BI, 4v6c:BI, 4v6c:DI, 4v6d:BI, 4v6d:DI, 4v6e:BI, 4v6e:DI, 4v6k:AJ, 4v6l:BJ, 4v6m:BI, 4v6n:AK, 4v6o:BK, 4v6p:BK, 4v6q:BK, 4v6r:BK, 4v6s:AK, 4v6t:BI, 4v6v:BK, 4v6y:BI, 4v6z:BI, 4v70:BI, 4v71:BI, 4v72:BI, 4v73:BI, 4v74:BI, 4v75:BI, 4v76:BI, 4v77:BI, 4v78:BI, 4v79:BI, 4v7a:BI, 4v7b:BI, 4v7c:BK, 4v7d:AK, 4v7i:AI, 4v7s:BI, 4v7s:DI, 4v7t:BI, 4v7t:DI, 4v7u:BI, 4v7u:DI, 4v7v:BI, 4v7v:DI, 4v85:BI, 4v89:BI, 4v9c:BI, 4v9c:DI, 4v9d:CI, 4v9d:DI, 4v9o:AI, 4v9o:CI, 4v9o:EI, 4v9o:GI, 4v9p:AI, 4v9p:CI, 4v9p:EI, 4v9p:GI, 8vs9:L11, 8vsa:L11, 8w51:J, 5wdt:I, 6wd0:i, 6wd1:i, 6wd2:i, 6wd3:i, 6wd4:i, 6wd5:i, 6wd6:i, 6wd7:i, 6wd8:i, 6wd9:i, 6wda:i, 6wdb:i, 6wdc:i, 6wdd:i, 6wde:i, 6wdf:i, 6wdg:i, 6wdh:i, 6wdi:i, 6wdj:i, 6wdk:i, 6wdl:i, 6wdm:i, 5we4:I, 5we6:I, 4wf1:BI, 4wf1:DI, 5wf0:I, 5wfk:I, 5wfs:I, 6wnt:i, 6wnv:i, 6wnw:i, 4woi:BI, 4woi:CI, 4www:RI, 4www:YI, 6xz7:I, 6xza:I2, 6xzb:I2, 4ybb:CJ, 4ybb:DJ, 7yla:Q, 6ysr:I, 6yss:I, 6yst:I, 6ysu:I, 6ztj:BJ
6 5dir:A 157 68 0.0231 0.1146 0.2647 2.7 5dir:C, 5dir:D, 5dir:B, 6fms:A, 6fms:B, 6fms:C, 6fms:D
7 8e1u:A 1126 45 0.0205 0.0142 0.3556 3.0 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218