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BioLiP
>protein
KQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLPKK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dks:A 76 73 1.0000 0.9605 1.0000 1.88e-50 2ass:C, 2ast:C, 7b5m:K, 8bya:F, 8byl:C, 1dks:B, 1dkt:A, 1dkt:B, 7nj0:D
2 7dah:C 288 58 0.2055 0.0521 0.2586 8.8 7dah:F
3 3nip:B 316 65 0.2466 0.0570 0.2769 9.1 3nip:C, 3nip:E, 3nip:D, 3nip:F, 3niq:A, 3niq:B
4 4m8d:D 263 48 0.2055 0.0570 0.3125 9.2 4j0n:A, 4j0n:B, 4m8d:A, 4m8d:B, 4m8d:C, 4m8d:E, 4m8d:F, 4m8d:G, 4m8d:H, 4m8d:I, 4m8d:J, 4m8d:K, 4m8d:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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