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BioLiP
>protein
KPTKVTLVKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3cyy:B 81 80 1.0000 0.9877 1.0000 7.23e-54 3cyy:A
2 8bp4:A 93 57 0.2750 0.2366 0.3860 1.98e-06 8bp4:C, 8bp4:B
3 2r4h:C 98 80 0.3000 0.2449 0.3000 5.53e-06
4 3vqg:A 85 82 0.3250 0.3059 0.3171 1.54e-05
5 7p73:A 420 58 0.2625 0.0500 0.3621 4.76e-05 8ael:A, 7p74:A, 7pc9:A, 7pc9:B, 7r2m:A, 7r2m:D, 7r2t:A
6 4xhv:A 94 57 0.2250 0.1915 0.3158 3.43e-04
7 3r0h:D 199 79 0.2875 0.1156 0.2911 8.51e-04 3r0h:A, 3r0h:C, 3r0h:B, 3r0h:E, 3r0h:H, 3r0h:F, 3r0h:G
8 6ar4:B 87 80 0.2500 0.2299 0.2500 0.001 6ar4:A, 6bjo:A, 6bjo:B, 2pku:A
9 4m28:A 483 86 0.3750 0.0621 0.3488 0.002 4m2a:A, 4m2b:A, 5nzg:A, 5nzi:A, 5nzj:A, 5nzk:A, 5nzl:A, 5nzm:A, 2oeg:A
10 6xa7:B 96 57 0.2250 0.1875 0.3158 0.002 7qrt:A, 7qrt:B, 6xa7:A, 6xa7:C, 6xa7:D
11 1l6o:A 95 40 0.2000 0.1684 0.4000 0.003 2f0a:B, 2f0a:D, 1l6o:B, 1l6o:C, 6zbq:B, 6zbz:A, 6zbz:B, 6zbz:C, 6zbz:D, 6zc3:A, 6zc3:B, 6zc4:B, 6zc6:A, 6zc7:A, 6zc7:B, 6zc8:A, 6zc8:B
12 7qct:A 90 82 0.2750 0.2444 0.2683 0.003 7qct:B
13 2kaw:A 90 40 0.2000 0.1778 0.4000 0.003 6lcb:A, 2mx6:A
14 6zbq:A 89 40 0.2000 0.1798 0.4000 0.004 6zc4:A
15 8sxg:A 366 41 0.2250 0.0492 0.4390 0.007 8sxe:A, 8sxe:B, 8sxf:A, 8sxh:A, 8sxh:E, 8sxh:I
16 2os6:A 89 66 0.2500 0.2247 0.3030 0.012
17 4e34:A 87 55 0.1875 0.1724 0.2727 0.013 4e34:B, 4e35:A, 4e35:B, 5ic3:A, 5ic3:B, 4joe:A, 4joe:B, 4jof:A, 4jof:B, 4jog:A, 4jog:B, 4joh:A, 4joh:B, 4joj:A, 4joj:B, 4jok:A, 4jok:B, 4jop:A, 4jop:B, 4jor:A, 4jor:B, 7jzo:A, 7jzo:B, 7jzp:A, 7jzp:B, 7jzq:A, 7jzr:A, 7jzr:B, 5k4f:A, 5k4f:B, 4k6y:A, 4k6y:B, 4k72:A, 4k72:B, 4k75:A, 4k76:A, 4k76:B, 4k76:C, 4k76:D, 4k78:A, 2lob:A, 4nmo:A, 4nmo:B, 4nmp:A, 4nmp:B, 4nmq:A, 4nmq:B, 4nmr:A, 4nmr:B, 4nms:A, 4nms:B, 4nmt:A, 4nmt:B, 4nmv:A, 4nmv:B, 6ov7:A, 6ov7:B, 4q6h:A, 4q6s:A, 4q6s:B, 6v84:A, 6v84:B, 6xnj:A
18 6nid:B 88 77 0.2500 0.2273 0.2597 0.017 6nid:A, 6nid:C
19 6gbe:A 119 55 0.2000 0.1345 0.2909 0.018
20 2ejy:A 85 53 0.2000 0.1882 0.3019 0.042
21 1ihj:B 95 56 0.2250 0.1895 0.3214 0.059 1ihj:A
22 8bq8:C 93 57 0.2000 0.1720 0.2807 0.063 8bq8:A, 8bq8:B
23 6q0m:B 94 87 0.2625 0.2234 0.2414 0.063
24 2m0z:A 97 36 0.1750 0.1443 0.3889 0.069 1d5g:A, 3lny:A, 2m10:A, 1vj6:A, 7xty:A, 7xty:B
25 4ydp:A 83 72 0.2250 0.2169 0.2500 0.20 4ydp:B
26 6s20:C 480 66 0.2000 0.0333 0.2424 0.23
27 2joa:A 105 56 0.2375 0.1810 0.3393 0.23
28 8cn1:H 101 59 0.1750 0.1386 0.2373 0.43 8cn1:C, 8cn1:G, 8cn1:J, 8cn1:L, 8cn1:F, 8cn1:K, 8cn1:I, 3rl7:B
29 2ka9:A 189 40 0.1750 0.0741 0.3500 0.44 8cn1:B, 8cn1:A, 8cn1:E, 8cn1:D, 2mho:A, 1rgr:A, 3rl7:A, 3rl7:F, 3rl7:D, 3rl7:C, 3rl7:E, 6spv:A, 6spz:A
30 7w6z:A 414 54 0.2375 0.0459 0.3519 0.45 7w6y:A
31 7pc3:A 405 47 0.1750 0.0346 0.2979 0.51 2awu:B, 2aww:A, 2awx:B, 8cn3:A, 8cn3:B, 2g2l:A, 2g2l:B, 4g69:A, 2i0l:A, 2i0l:B, 2m3m:A, 4oaj:A, 2oqs:A, 3rl8:B
32 2kpl:A 129 29 0.1375 0.0853 0.3793 0.61
33 4wsi:A 372 55 0.1875 0.0403 0.2727 0.73 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
34 6fah:E 393 38 0.1750 0.0356 0.3684 1.0 6fah:A
35 5n7d:A 423 29 0.1375 0.0260 0.3793 1.1 2i04:A, 2i04:B, 5n7d:B, 5n7f:A, 5n7f:B, 5n7g:A, 7p71:A, 7p71:B, 6twq:B, 6twq:A, 6twu:B, 6twu:A, 6twx:B, 6twx:A, 6twy:B, 6twy:A
36 3jxt:A 96 74 0.2375 0.1979 0.2568 1.1 3jxt:B
37 7qqm:A 413 57 0.2125 0.0412 0.2982 1.3
38 2koh:A 111 64 0.2125 0.1532 0.2656 1.3 9imp:A, 9imp:B, 9imp:C, 9imp:D, 9imp:E, 9imp:F, 6jue:L, 2k20:A
39 5wou:A 95 57 0.2125 0.1789 0.2982 1.3
40 2exg:A 101 47 0.1750 0.1386 0.2979 1.7 2ain:A, 7qcr:B, 7qcr:A
41 1zub:A 109 58 0.1875 0.1376 0.2586 2.5
42 2kqf:A 96 46 0.1375 0.1146 0.2391 2.8 2kyl:A
43 4wyu:A 201 28 0.1250 0.0498 0.3571 3.6 8b8o:B, 8b8o:A, 8b9t:A, 8bj0:A, 7qs8:A, 7qs8:B, 7qsa:A, 7qsa:B, 7qtu:B, 7qtu:A, 7qtu:E, 7qtu:G, 5vwi:A, 5vwi:B, 4wyu:B, 6xa6:B, 6xa6:A
44 6e4v:A 672 80 0.2750 0.0327 0.2750 3.9
45 2egn:A 83 75 0.2125 0.2048 0.2267 4.4
46 8glv:OD 370 30 0.1500 0.0324 0.4000 4.6
47 4xh7:A 110 47 0.1500 0.1091 0.2553 5.4
48 5heb:A 119 56 0.1750 0.1176 0.2500 6.4 1be9:A, 5d13:B, 5d13:A, 5d13:C, 5d13:D, 5hed:A, 5hey:A, 5hf1:A, 5hfb:A, 5hfc:A, 5hfe:A, 5hff:A, 1tp3:A, 1tp5:A
49 7kvy:A 633 46 0.1375 0.0174 0.2391 7.0 7kcp:A, 7kq6:A, 7kq6:B, 7kq6:C, 7kqz:A, 7l3p:A, 7l3q:A, 7l3q:B, 7l3q:C
50 3gue:A 468 28 0.1375 0.0235 0.3929 7.8 3gue:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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