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BioLiP
>protein
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qr9:A 75 71 1.0000 0.9467 1.0000 1.38e-47 4qr9:B
2 5ze0:N 118 67 0.9014 0.5424 0.9552 5.85e-39 1ckt:A
3 6cij:N 133 70 0.8873 0.4737 0.9000 3.59e-38 5zdz:N, 5ze1:N, 5ze2:N
4 6cij:N 133 48 0.1972 0.1053 0.2917 1.7 5zdz:N, 5ze1:N, 5ze2:N
5 6cik:N 90 30 0.4225 0.3333 1.0000 1.05e-15 6cg0:N, 6cim:N
6 1j5n:A 93 70 0.3662 0.2796 0.3714 1.92e-11
7 1e7j:A 74 71 0.2958 0.2838 0.2958 1.08e-05 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 6hb4:A 197 71 0.3239 0.1168 0.3239 0.004 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
9 6hb4:A 197 67 0.2394 0.0863 0.2537 0.075 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
10 1gt0:D 79 69 0.3099 0.2785 0.3188 0.013 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
11 2gzk:A 159 70 0.2817 0.1258 0.2857 0.025 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
12 5jh0:D 157 52 0.2113 0.0955 0.2885 0.080 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
13 7m5w:A 138 55 0.2254 0.1159 0.2909 0.27 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
14 6t78:A 77 44 0.1972 0.1818 0.3182 2.0 6t78:B, 3u2b:C
15 6alj:A 492 54 0.2113 0.0305 0.2778 2.9 6alj:B, 6alj:C, 6alj:D, 6b5g:A, 6b5g:B, 6b5g:C, 6b5g:D, 6b5h:A, 6b5h:B, 6b5h:C, 6b5h:D, 6b5i:A, 6b5i:B, 6b5i:C, 6b5i:D, 1bi9:A, 1bi9:B, 1bi9:C, 1bi9:D, 4x2q:A, 4x2q:B, 4x2q:C, 4x2q:D
16 5abm:A 494 48 0.1972 0.0283 0.2917 2.9 5abm:B, 5abm:C, 5abm:D, 5ac0:A, 5ac0:B, 5ac1:A, 5ac1:B, 5ac1:C, 5ac1:D, 5ac2:A, 1bxs:A, 1bxs:B, 1bxs:C, 1bxs:D, 6dum:A, 8ene:A, 8ene:B, 8ene:C, 8ene:D, 7jws:A, 7jwt:A, 7jwu:A, 7jwv:A, 7jww:A, 5l2m:A, 5l2n:A, 5l2o:A, 5l2o:B, 5l2o:C, 5l2o:D, 5l2o:E, 5l2o:F, 5l2o:G, 5l2o:H, 8t0n:A, 8t0t:A, 5tei:A, 7um9:A, 4wb9:A, 8wfq:A, 8wfq:B, 8wfq:C, 8wfq:D, 8wfq:E, 8wfq:F, 8wfq:G, 8wfq:H, 4wp7:A, 4wpn:A, 4x4l:A
17 8br8:LN 130 51 0.2394 0.1308 0.3333 3.7 8brm:LN, 8bsi:LN, 8bsj:LN, 8btd:LN, 8btr:LN, 8fru:M, 7pwg:M, 7pwo:M2
18 8cls:A 837 65 0.2676 0.0227 0.2923 4.0
19 5i4k:A 280 50 0.1831 0.0464 0.2600 4.1
20 8cls:B 853 65 0.2676 0.0223 0.2923 4.6
21 2z8d:A 401 42 0.1972 0.0349 0.3333 6.2 2z8d:B, 2z8e:A, 2z8e:B, 2z8f:A, 2z8f:B
22 7y1j:A 1204 28 0.1268 0.0075 0.3214 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218