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BioLiP
>protein
KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
LEKAGA

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3o2b:C 105 84 0.9767 0.8000 1.0000 1.53e-59 1mbx:D, 3o2b:A, 3o2h:A, 1r6o:D, 1r6q:D, 2w9r:A, 2wa8:A, 2wa8:C, 2wa9:A, 2wa9:B, 2wa9:C, 2wa9:D, 2wa9:E, 2wa9:F, 2wa9:G
2 3gq1:A 85 83 0.5581 0.5647 0.5783 2.43e-32 3dnj:A, 3dnj:B, 3g19:A, 3g1b:A, 3g1b:B, 3g3p:B, 3gq1:B, 3gw1:A, 3gw1:B
3 4yjx:C 84 80 0.3605 0.3690 0.3875 1.87e-14 4yjx:A, 4yjx:B, 4yjx:D, 4yka:A, 4yka:B, 4yka:C, 4yka:D
4 7d34:A 79 60 0.2558 0.2785 0.3667 6.91e-04
5 7vx0:B 680 61 0.2209 0.0279 0.3115 1.4 7vx0:A, 7vyj:A, 7vyj:B, 7vyo:A, 7vyo:B, 7vyp:A, 7vyp:B, 7vzn:A, 7vzn:B, 7vzq:A, 7vzq:B, 7vzu:A, 7vzu:B, 7vzy:A, 7vzy:B, 7vzz:A, 7vzz:B
6 8jev:A 556 15 0.0930 0.0144 0.5333 4.1 8jev:B
7 8jgj:A 684 15 0.0930 0.0117 0.5333 4.1 8jgj:B, 8jgk:A, 8jgk:B, 8jgl:A, 8jgl:B, 8jgv:A, 8jgv:B
8 4x0o:E 360 24 0.1279 0.0306 0.4583 4.6 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H
9 7r2v:B 439 65 0.1860 0.0364 0.2462 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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