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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNFKSQVDGNDAESAFLDAHSKA
EIVDMLRKHTYADEFEQSR

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7et4:D 104 99 1.0000 0.9519 1.0000 1.24e-71 7et4:A, 7et4:G, 7et4:J
2 5wx9:A 131 59 0.2929 0.2214 0.4915 2.91e-10
3 1gcc:A 63 61 0.2727 0.4286 0.4426 1.49e-09
4 7wq5:A 172 98 0.2828 0.1628 0.2857 2.24e-05 7wq5:B
5 7wq5:A 172 59 0.2929 0.1686 0.4915 3.69e-05 7wq5:B
6 7o9m:d 220 63 0.2020 0.0909 0.3175 1.6 7a5h:d, 7a5j:d, 6i9r:d, 7of0:d, 7of2:d, 7of3:d, 7of4:d, 7of5:d, 7of6:d, 7of7:d, 7og4:d, 7oi6:d, 7oi7:d, 7oi8:d, 7oi9:d, 7oia:d, 7oib:d, 7oid:d, 7oie:d, 5ool:d, 5oom:d, 7pd3:d, 8qu5:d, 6zs9:d, 6zsa:d, 6zsb:d, 6zsc:d, 6zsd:d, 6zse:d, 6zsg:d
7 3n92:A 550 54 0.2121 0.0382 0.3889 2.1 3n98:A
8 4cys:A 534 32 0.1515 0.0281 0.4688 2.4 5aj9:A, 5aj9:B, 4cxk:A, 4cxk:B, 4cxs:A, 4cxs:B, 4cxu:A, 4cxu:B, 4cyr:A, 4cyr:B, 4cys:B, 1hdh:A, 1hdh:B
9 6goc:A 444 45 0.1414 0.0315 0.3111 3.5
10 6ide:B 228 85 0.2222 0.0965 0.2588 3.6 6ide:A, 6kju:A, 6kju:B, 6ugl:B
11 7eoz:A 482 55 0.1616 0.0332 0.2909 4.3 7eoz:B
12 7odr:d 259 49 0.1616 0.0618 0.3265 5.5 8any:d, 7l08:d, 7l20:d, 7o9k:d, 7odt:d, 8oir:Bu, 8oit:Bu, 8pk0:d, 7po4:d, 7qi4:d, 7qi5:d, 7qi6:d, 8qsj:d, 6vlz:d, 6vmi:d, 6zm5:d, 6zm6:d

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417