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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KLGSTLRKVRNGKQISICSVADEHLSKSQISRFERGESEISCIRLINILDKLHITLDEFLILHDEDYTKTESFANLVQYI
RKQYSLQNINNIQSLLSDSSNYTLDPFEKTMVKSILHTMDSSIIPSDDELLQLADYLFKVEKWGYYEIILLGNCVRTIDY
NSVFLLTKEMLNNYIYSSLNKTNKRIVTQLAINCLILSIDMEEFTNCFYLIDEIKALLDNELNFYEQTVFLYATGYFEFK
RWQSTSGIEKMKQAIQVLDILGEDNLKLHYTIHFDKLINN

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6w1f:A 280 280 1.0000 1.0000 1.0000 0.0 7ji0:A, 7ji0:B, 6w1f:B
2 6w1a:A 274 276 0.5429 0.5547 0.5507 1.54e-103 6w1a:B, 4yv9:A, 4yv9:B, 4yv9:C, 4yv9:D
3 4ryk:A 295 163 0.1500 0.1424 0.2577 7.16e-07
4 6dql:A 227 225 0.2000 0.2467 0.2489 0.005
5 3ox5:A 153 42 0.0643 0.1176 0.4286 0.059 2k7b:A, 2k7d:A, 2lan:A, 2lap:A, 3ox5:B, 3ox5:C, 3ox5:D, 3ox5:E, 3ox5:F, 3ox6:A, 3ox6:B, 3ox6:C, 3ox6:D, 3ox6:F
6 5j6y:A 188 93 0.1036 0.1543 0.3118 0.13 6x7j:A, 6x7t:A, 6x7x:A, 6x7y:A, 6x7z:A, 6x8a:A, 6x8d:A, 6x8y:A, 6x95:A, 6x9m:A, 6x9p:A, 6xa5:A, 6xac:A, 6xaq:A
7 4iw3:A 201 138 0.0821 0.1144 0.1667 0.52 4iw3:J, 4j25:E, 4j25:F, 4j25:G, 4j25:H
8 4j25:A 181 142 0.0821 0.1271 0.1620 1.6 4j25:B, 4j25:C, 4j25:D
9 2qfc:A 284 92 0.0929 0.0915 0.2826 2.0 2qfc:B, 3u3w:A, 3u3w:B
10 5crl:B 119 66 0.0571 0.1345 0.2424 2.5
11 8ffz:A 314 112 0.1143 0.1019 0.2857 2.7
12 2kt4:B 157 24 0.0393 0.0701 0.4583 3.7 2lbv:A
13 8fky:SM 500 46 0.0464 0.0260 0.2826 4.8 8fkp:SM, 8fkq:SM, 8fkr:SM, 8fks:SM, 8fkt:SM, 8fku:SM, 8fkv:SM, 8fkw:SM, 8fkx:SM, 8fkz:SM, 8fl2:SM, 8fl3:SM, 8fl4:SM, 8fl6:SM, 8fl7:SM, 8fla:SM, 8flb:SM, 8fld:SM, 8fle:SM, 8ine:v, 8inf:v, 8ipx:q, 8ipy:q, 8ir3:q
14 3ox6:E 118 42 0.0536 0.1271 0.3571 5.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218