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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKVCVIGAGTMGSGIAQAFAAKGFEVVLRDIKDEFVDRGLDFINKNLSKLVKKGKIEEATKVEILTRISGTVDLNMAADC
DLVIEAAVERMDIKKQIFADLDNICKPETILASNTSSLSITEVASATKRPDKVIGMHFFNPAPVMKLVEVIRGIATSQET
FDAVKETSIAIGKDPVEVAEAPGFVVNRILIPMINEAVGILAEGIASVEDIDKAMKLGANHPMGPLELGDFIGLDICLAI
MDVLYSETGDSKYRPHTLLKKYVRAGWLGRKSGKGFYDYSK

The query sequence (length=281) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6aa8:E 281 281 1.0000 1.0000 1.0000 0.0 6aa8:F
2 4kug:A 282 281 0.8114 0.8085 0.8114 8.83e-168 4kug:B, 4kug:C, 4kug:D, 4kuh:A, 4kuh:B, 4kuh:C, 4kuh:D, 4kuh:E, 4kuh:F, 4kuh:G, 4kuh:H
3 4pzd:A 283 281 0.5374 0.5336 0.5374 7.02e-104 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
4 1f12:A 293 287 0.4591 0.4403 0.4495 5.13e-76 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
5 6iun:B 692 288 0.4128 0.1676 0.4028 3.49e-53 6iun:A
6 6iun:B 692 97 0.1068 0.0434 0.3093 0.020 6iun:A
7 8oqs:B 735 287 0.3701 0.1415 0.3624 6.89e-53 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
8 6ysw:A 707 260 0.3452 0.1372 0.3731 4.96e-48
9 1wdl:A 715 262 0.3523 0.1385 0.3779 5.59e-45 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
10 1wdl:A 715 86 0.0890 0.0350 0.2907 0.86 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
11 6tnm:A 719 265 0.3416 0.1335 0.3623 1.34e-44
12 6tnm:A 719 52 0.0747 0.0292 0.4038 0.049
13 3zwa:A 727 293 0.3915 0.1513 0.3754 1.95e-44 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
14 3zwa:A 727 87 0.0961 0.0371 0.3103 0.047 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
15 3k6j:A 430 280 0.3381 0.2209 0.3393 1.02e-43
16 3k6j:A 430 55 0.0747 0.0488 0.3818 0.12
17 4dyd:A 283 287 0.3488 0.3463 0.3415 3.44e-40 4e13:A
18 4om8:A 309 289 0.3060 0.2783 0.2976 1.66e-36 4om8:B
19 3f3s:A 312 231 0.2776 0.2500 0.3377 1.65e-28 3f3s:B
20 3adp:A 310 231 0.2740 0.2484 0.3333 2.62e-23
21 2bc0:A 473 54 0.0854 0.0507 0.4444 0.002 2bc0:B, 2bc1:A, 2bc1:B, 2bcp:A, 2bcp:B
22 7a3w:B 293 132 0.1139 0.1092 0.2424 0.096 7a3w:A
23 5mh5:A 308 59 0.0747 0.0682 0.3559 0.13 5mh5:B, 5mh6:A, 5mh6:B, 5mh6:C, 5mh6:D, 5mha:A, 5mha:B
24 3wsw:A 316 124 0.1246 0.1108 0.2823 0.20 3wsw:B, 3wsw:C, 3wsw:D
25 1lld:A 313 38 0.0676 0.0607 0.5000 0.22 1lld:B, 1lth:T, 1lth:R
26 6bz0:A 469 71 0.0819 0.0490 0.3239 0.31 6bz0:B, 6bz0:C, 6bz0:D
27 3o03:A 254 41 0.0569 0.0630 0.3902 0.32
28 4ure:B 248 139 0.1352 0.1532 0.2734 0.42 4urf:A, 4urf:B
29 1mfz:A 436 76 0.0747 0.0482 0.2763 0.43 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
30 4r16:A 418 72 0.0747 0.0502 0.2917 0.48 4r16:B
31 1uxg:A 308 114 0.1210 0.1104 0.2982 0.62 1guy:A, 1guy:C, 1ur5:A, 1ur5:C, 1uxg:B, 1uxh:A, 1uxh:B, 1uxi:A, 1uxi:B, 1uxj:A, 1uxj:C, 1uxk:A, 1uxk:C
32 4j34:B 390 51 0.0712 0.0513 0.3922 0.66 4j2w:A, 4j2w:B, 4j31:A, 4j31:B, 4j33:A, 4j33:B, 4j34:A, 4j36:A, 4j36:B, 5x6r:A, 5x6r:B
33 4yai:A 273 39 0.0534 0.0549 0.3846 0.83 4yag:A, 4yag:B, 4yai:B
34 6ruz:A 443 53 0.0569 0.0361 0.3019 0.86 6ruz:B, 6ruz:C, 6ruz:D, 6rvb:A, 6rvb:B, 6rvb:C, 6rvb:D, 6rvh:A, 6rvh:B, 6rvh:C, 6rvh:D
35 3lad:A 472 70 0.0712 0.0424 0.2857 0.86 3lad:B
36 4prl:A 330 31 0.0463 0.0394 0.4194 1.1 4prl:B
37 4emj:A 406 57 0.0783 0.0542 0.3860 1.2 3ef6:A, 4emi:A
38 1f8w:A 447 96 0.1068 0.0671 0.3125 1.8 1joa:A, 1nhp:A, 1nhq:A, 1nhr:A, 1nhs:A, 1npx:A, 2npx:A
39 1hyh:A 297 103 0.1103 0.1044 0.3010 1.8 1hyh:B, 1hyh:C, 1hyh:D
40 6g1h:A 342 123 0.1210 0.0994 0.2764 1.9 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
41 4d3f:B 289 65 0.0747 0.0727 0.3231 2.4
42 2bi7:A 383 34 0.0463 0.0339 0.3824 2.5 2bi8:A, 3gf4:A, 3gf4:B, 3inr:A, 3inr:B, 3int:A, 3int:B, 3kyb:A, 3kyb:B, 1wam:A
43 4k28:A 266 130 0.1032 0.1090 0.2231 2.7 4k28:B
44 8c0z:E 424 37 0.0498 0.0330 0.3784 2.8
45 4rnu:C 385 30 0.0463 0.0338 0.4333 2.8 4rnu:A, 4rnu:B, 4rnu:D, 4rnv:A, 4rnv:B, 4rnv:C, 4rnv:D, 4rnw:A, 4rnw:B
46 6l6j:A 669 125 0.1103 0.0463 0.2480 3.1
47 5v4v:A 397 31 0.0463 0.0327 0.4194 3.2 5v4p:A, 5v4p:B, 5v4v:B
48 1gpj:A 399 28 0.0427 0.0301 0.4286 3.2
49 4rnx:A 390 30 0.0463 0.0333 0.4333 3.4 4rnx:B
50 1bwk:A 399 30 0.0463 0.0326 0.4333 3.6 7bn7:A, 7bn7:B, 7bn7:C, 7bn7:D, 1bwl:A, 4gbu:A, 4ge8:A, 4gwe:A, 4gxm:A, 4h4i:A, 4h6k:A, 1k02:A, 1k03:A, 4k7v:A, 4k7y:A, 4k8e:A, 4k8h:A, 1oya:A, 1oyb:A, 1oyc:A, 3rnd:A, 3tx9:A, 3txz:A, 4yil:A, 4ync:A
51 3d1l:B 259 25 0.0356 0.0386 0.4000 4.1
52 6vsp:B 252 39 0.0641 0.0714 0.4615 4.2 6vsp:A, 6xew:A, 6xew:B, 6xex:A
53 1z82:A 312 36 0.0498 0.0449 0.3889 4.4 1z82:B
54 6msb:c 287 52 0.0534 0.0523 0.2885 4.5 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
55 6vr7:A 485 62 0.0925 0.0536 0.4194 4.5
56 7vml:A 4044 85 0.0819 0.0057 0.2706 4.6 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
57 7wli:A 1135 49 0.0569 0.0141 0.3265 4.8 7wlj:A, 7wlk:A, 7wll:A
58 2yq5:C 331 29 0.0427 0.0363 0.4138 5.0 2yq5:A, 2yq5:B, 2yq5:D
59 8ro1:L 623 50 0.0463 0.0209 0.2600 5.7 8ro0:L
60 8k32:C 333 37 0.0569 0.0480 0.4324 5.9 8k32:A, 8k32:B, 8k32:D
61 5u8u:D 477 53 0.0641 0.0377 0.3396 6.2 1lpf:A, 1lpf:B, 5u8u:A, 5u8u:B, 5u8u:C, 5u8v:A, 5u8v:B, 5u8v:C, 5u8v:D, 5u8w:A, 5u8w:B, 5u8w:C, 5u8w:D
62 5jpi:A 496 31 0.0427 0.0242 0.3871 6.2 5hm8:A, 5hm8:B, 5hm8:C, 5hm8:D, 5hm8:E, 5hm8:F, 5hm8:G, 5hm8:H, 5jpi:B, 5jpi:C, 5jpi:D, 5jxw:A, 5jxw:B, 5jxw:C, 5jxw:D, 5t8k:A, 5t8k:C, 5t8k:B, 5t8k:D, 5tj9:A, 5tj9:B, 5tj9:C, 5tj9:D, 5tls:A, 5tls:B, 5tls:C, 5tls:D, 5utu:A, 5utu:B, 5utu:C, 5utu:D, 5utu:E, 5utu:F, 5utu:G, 5utu:H
63 4thi:A 362 20 0.0356 0.0276 0.5000 6.5
64 7bvs:A 290 79 0.0783 0.0759 0.2785 6.5 7exb:A
65 5dt9:A 379 30 0.0463 0.0343 0.4333 7.2
66 7mqa:SP 2485 129 0.1103 0.0125 0.2403 7.2
67 5b82:A 161 40 0.0463 0.0807 0.3250 8.9
68 4tsk:A 333 28 0.0427 0.0360 0.4286 8.9
69 8odw:A 612 32 0.0391 0.0180 0.3438 9.9 8odw:B
70 6t2b:B 439 69 0.0783 0.0501 0.3188 10.0 6t2b:A, 6t2b:C, 6t2b:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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