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BioLiP
>protein
KKTCPVNFEFMNYTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGLFANQCKEGKE
GLECPAGSQLPPE

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6a5d:B 93 93 1.0000 1.0000 1.0000 8.93e-65 6a5d:A
2 6a5e:C 84 82 0.6237 0.6905 0.7073 8.27e-40 6a5e:D
3 5z98:B 182 49 0.1720 0.0879 0.3265 0.24 5z98:A
4 6b82:B 470 26 0.1505 0.0298 0.5385 1.1 6b82:A, 4r1z:A, 4r1z:B
5 8opp:A 670 41 0.1398 0.0194 0.3171 2.5
6 2obe:A 915 23 0.1183 0.0120 0.4783 2.8 2obe:B, 2obe:C
7 7rd1:J 942 23 0.1183 0.0117 0.4783 2.8 7rd1:L, 7rd1:A, 7rd1:C, 7rd1:D, 7rd1:F, 7rd1:B, 7rd1:E, 7rd1:G, 7rd1:H, 7rd1:K, 7rd1:I
8 6z7n:B 847 23 0.1183 0.0130 0.4783 9.1
9 6z7n:A 788 23 0.1183 0.0140 0.4783 9.7
10 6z7n:C 860 23 0.1183 0.0128 0.4783 9.8 6z7n:L
11 6z7n:H 894 23 0.1183 0.0123 0.4783 9.8 6z7n:G, 6z7n:D, 6z7n:E, 6z7n:F
12 6yba:E 917 23 0.1183 0.0120 0.4783 9.8 6yba:F, 6yba:D, 6yba:A, 6yba:C, 6yba:G, 6yba:I, 6yba:B, 6z7n:I, 6z7n:J
13 6z7n:K 840 23 0.1183 0.0131 0.4783 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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