Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nk2:P 77 63 1.0000 0.8182 1.0000 1.34e-40 1nk3:P
2 3rkq:A 58 57 0.6825 0.7414 0.7544 6.24e-27 3rkq:B
3 5flv:M 229 53 0.6508 0.1790 0.7736 7.41e-24 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
4 1ig7:A 58 57 0.5397 0.5862 0.5965 6.78e-16
5 4rdu:D 62 57 0.4603 0.4677 0.5088 7.54e-14 4rdu:A, 4xrs:I, 4xrs:G
6 2me6:A 71 59 0.4762 0.4225 0.5085 8.68e-14
7 3a01:A 78 63 0.4762 0.3846 0.4762 4.22e-13 3a01:E
8 8pna:A 67 59 0.4762 0.4478 0.5085 5.18e-13 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
9 1puf:A 77 61 0.4603 0.3766 0.4754 3.97e-11 2lp0:A
10 2h1k:B 60 56 0.3968 0.4167 0.4464 1.17e-10 2h1k:A
11 1zq3:P 68 52 0.3968 0.3676 0.4808 1.33e-10
12 4rbo:A 55 54 0.3651 0.4182 0.4259 3.13e-10 4rbo:D
13 8eml:A 58 54 0.4127 0.4483 0.4815 5.85e-10 8eml:B
14 2ld5:A 67 61 0.3810 0.3582 0.3934 7.10e-10
15 5zjr:A 64 57 0.4444 0.4375 0.4912 8.81e-10 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
16 1b72:A 68 58 0.4286 0.3971 0.4655 1.07e-09
17 1jgg:A 57 54 0.3651 0.4035 0.4259 2.20e-09 1jgg:B
18 6es3:K 72 58 0.3968 0.3472 0.4310 3.40e-09 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
19 5eea:G 63 58 0.3175 0.3175 0.3448 1.74e-08 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
20 1ahd:P 68 54 0.3968 0.3676 0.4630 2.37e-08
21 8ejo:A 56 52 0.3333 0.3750 0.4038 3.01e-08 8ejo:B, 8ejp:A, 8ejp:B
22 4uus:A 67 51 0.3651 0.3433 0.4510 3.15e-08 4uus:E
23 2r5z:A 75 56 0.3968 0.3333 0.4464 3.59e-08 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
24 4cyc:A 66 51 0.3651 0.3485 0.4510 1.00e-07 1b8i:A
25 6m3d:C 108 55 0.3333 0.1944 0.3818 2.13e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
26 6m3d:C 108 47 0.3016 0.1759 0.4043 1.55e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
27 1fjl:A 65 54 0.3492 0.3385 0.4074 2.73e-07 1fjl:B, 1fjl:C
28 2lkx:A 68 55 0.3492 0.3235 0.4000 4.61e-07
29 3a01:F 61 54 0.3651 0.3770 0.4259 8.24e-07 3a01:B, 3lnq:A
30 1le8:A 53 42 0.2698 0.3208 0.4048 2.10e-06 1akh:A, 1yrn:A
31 4qtr:C 57 55 0.3333 0.3684 0.3818 2.28e-06 4qtr:A, 4qtr:B, 4qtr:D
32 3cmy:A 60 53 0.3492 0.3667 0.4151 3.34e-06
33 8osb:E 62 51 0.3492 0.3548 0.4314 4.42e-06
34 9b8u:B 66 51 0.3016 0.2879 0.3725 3.81e-05 9b8u:A, 9b8u:C, 9b8u:D
35 6e8c:A 135 56 0.3175 0.1481 0.3571 7.79e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 6e8c:A 135 50 0.2698 0.1259 0.3400 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
37 5wc9:A 136 58 0.3175 0.1471 0.3448 0.005 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
38 5hod:A 61 28 0.2222 0.2295 0.5000 0.13 5hod:D
39 8ik5:C 67 28 0.2063 0.1940 0.4643 0.20 8ike:C, 8ilw:C
40 3l1p:A 147 45 0.2381 0.1020 0.3333 0.28 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
41 7xrc:C 134 43 0.2698 0.1269 0.3953 0.39 2xsd:C
42 4egc:A 539 41 0.2381 0.0278 0.3659 0.42
43 3d1n:I 150 54 0.2698 0.1133 0.3148 0.66 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
44 8g8e:X 140 44 0.2381 0.1071 0.3409 0.70 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
45 1gt0:C 137 59 0.2381 0.1095 0.2542 0.80 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
46 7dn3:A 1293 29 0.2222 0.0108 0.4828 0.91 7du2:A
47 7d58:A 1387 29 0.2222 0.0101 0.4828 0.92 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
48 8bx1:A 127 44 0.2222 0.1102 0.3182 1.1
49 4c16:A 280 69 0.2857 0.0643 0.2609 1.5 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
50 5xyi:S 135 44 0.2222 0.1037 0.3182 1.8
51 4d82:B 274 30 0.1429 0.0328 0.3000 3.3 4d81:A, 4d82:A, 4d82:C
52 7lhf:C 2300 32 0.1429 0.0039 0.2812 5.3 7lhe:A, 7lhe:D, 7lhe:C, 7lhe:B, 7lhf:A, 7lhf:D, 7lhf:B
53 4j19:A 77 28 0.1905 0.1558 0.4286 6.2 4j19:B
54 1mnm:C 77 53 0.2857 0.2338 0.3396 8.0 1mnm:D
55 3iam:2 179 37 0.2381 0.0838 0.4054 9.0 2fug:2, 2fug:B, 2fug:K, 2fug:T, 4hea:2, 4hea:C, 6i0d:2, 6i0d:C, 6i1p:2, 6i1p:C, 3i9v:2, 3i9v:B, 3iam:B, 3ias:2, 3ias:B, 3ias:K, 3ias:T, 3m9s:2, 3m9s:B, 6q8o:2, 6q8o:C, 6q8w:2, 6q8w:C, 6q8x:2, 6q8x:C, 6y11:2, 6y11:C, 2ybb:2, 6ziy:2, 6zjl:2, 6zjn:2, 6zjy:2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417