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BioLiP
>protein
KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1vfc:A 63 55 1.0000 0.8730 1.0000 5.56e-36 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
2 8ox1:M 65 54 0.5636 0.4769 0.5741 6.45e-18 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
3 7c4p:A 55 53 0.5273 0.5273 0.5472 7.95e-17 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
4 3osg:A 110 47 0.3636 0.1818 0.4255 4.28e-05 3osf:A, 3osf:D, 3osg:D
5 3osg:A 110 51 0.3818 0.1909 0.4118 1.16e-04 3osf:A, 3osf:D, 3osg:D
6 1h88:C 152 48 0.3273 0.1184 0.3750 0.003 1h89:C, 1h8a:C, 1mse:C, 1msf:C
7 1h88:C 152 45 0.3091 0.1118 0.3778 0.096 1h89:C, 1h8a:C, 1mse:C, 1msf:C
8 3jb9:W 426 42 0.3273 0.0423 0.4286 0.010
9 6g0l:M 855 34 0.2909 0.0187 0.4706 0.014 7nkx:W, 5o9g:W
10 6ftx:W 878 34 0.2909 0.0182 0.4706 0.015 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
11 9gd1:W 849 34 0.2909 0.0188 0.4706 0.028
12 7tn2:W 895 34 0.2909 0.0179 0.4706 0.029 9gd2:W, 9gd3:W
13 7f4l:B 130 55 0.3273 0.1385 0.3273 0.037 7f4m:B, 7f4n:B
14 2qhb:A 86 51 0.3091 0.1977 0.3333 0.17 2qhb:B
15 5gmk:c 436 25 0.2000 0.0252 0.4400 0.21 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
16 6j6g:c 436 25 0.2000 0.0252 0.4400 0.22 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
17 7b9v:O 280 25 0.2000 0.0393 0.4400 0.23
18 5gm6:c 415 25 0.2000 0.0265 0.4400 0.23
19 5lj5:O 283 25 0.2000 0.0389 0.4400 0.23
20 7dco:L 435 25 0.2000 0.0253 0.4400 0.23
21 6exn:O 320 25 0.2000 0.0344 0.4400 0.26 6bk8:S
22 6kks:A 106 30 0.2364 0.1226 0.4333 0.34
23 8ity:4 365 49 0.2909 0.0438 0.3265 0.36 8iue:4, 8iuh:4
24 7xur:A 307 49 0.2909 0.0521 0.3265 0.40
25 8ch6:P 330 43 0.2909 0.0485 0.3721 0.46 8i0t:L, 7qtt:P
26 9fmd:L 555 43 0.2909 0.0288 0.3721 0.48 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
27 8ro2:L 555 43 0.2909 0.0288 0.3721 0.57 7abi:L
28 8i0w:L 419 42 0.2727 0.0358 0.3571 0.65 5yzg:L
29 5z56:L 342 43 0.2909 0.0468 0.3721 0.69 5z57:L, 5z58:L
30 6id0:L 475 42 0.2727 0.0316 0.3571 0.69 6id1:L
31 6icz:L 454 42 0.2727 0.0330 0.3571 0.74 5xjc:L
32 8i0s:L 169 42 0.2727 0.0888 0.3571 0.74
33 8ro1:L 623 43 0.2727 0.0241 0.3488 1.1 8ro0:L
34 6qdv:O 441 42 0.2727 0.0340 0.3571 1.1 7w59:L, 7w5a:L, 7w5b:L
35 8i0u:L 387 42 0.2727 0.0388 0.3571 1.1 8i0v:L
36 5mqf:L 336 42 0.2727 0.0446 0.3571 1.9
37 6fyj:A 417 36 0.2000 0.0264 0.3056 3.4
38 6eg9:A 276 31 0.2182 0.0435 0.3871 3.7 6eg9:B, 6ega:A, 6ega:B, 6egd:D, 6egd:A, 6ege:A, 6f3e:A, 5k72:B, 5k75:A, 5k7i:A, 5k7i:B, 7qg1:A, 7qg5:A, 6rfj:A, 6thz:A, 4u97:A, 4u97:B, 4u9a:A, 4u9a:B, 5uiq:D, 5uis:A, 5uis:C, 4ztl:B
39 8v2f:C 302 31 0.2182 0.0397 0.3871 3.8 8atb:AAA, 8atb:BBB, 8atl:AAA, 8atl:BBB, 8atn:AAA, 8atn:BBB, 8br5:AAA, 8br5:BBB, 8br5:CCC, 8br5:DDD, 8br6:AAA, 8br6:BBB, 8br7:AAA, 8br7:BBB, 7c2v:A, 7c2v:B, 7c2v:C, 7c2v:D, 7c2w:A, 7c2w:B, 7c2w:C, 7c2w:D, 8dks:A, 8dks:B, 6ege:D, 6egf:B, 6f3d:A, 6f3d:B, 6f3e:B, 6f3g:A, 6f3g:B, 6f3i:B, 5k72:A, 5k72:C, 5k72:D, 5k75:B, 5k75:C, 5k75:D, 5k76:A, 5k76:B, 5k7g:A, 5k7g:B, 5k7g:C, 5k7g:D, 5kx7:B, 5kx8:A, 5kx8:B, 5kx8:C, 5kx8:D, 6lxy:A, 6lxy:B, 6lxy:D, 6lxy:E, 6mom:A, 6mom:B, 6mom:C, 6mom:D, 6n8g:A, 6n8g:B, 6n8g:C, 6n8g:D, 2nru:A, 2nru:B, 2nru:C, 2nru:D, 2nry:A, 2nry:B, 2nry:C, 2nry:D, 6o8u:A, 6o8u:B, 6o8u:C, 6o8u:D, 6o94:A, 6o94:B, 6o94:C, 6o94:D, 6o95:A, 6o95:B, 6o95:C, 6o95:D, 6o9d:A, 6o9d:B, 6o9d:C, 6o9d:D, 2oic:A, 2oic:B, 2oic:C, 2oic:D, 2oid:B, 2oid:D, 7qg1:B, 7qg2:A, 7qg2:B, 7qg2:C, 7qg2:D, 7qg3:A, 7qg3:B, 7qg5:B, 6rfi:A, 6rfi:B, 6rfj:B, 4rmz:A, 4rmz:B, 5t1s:A, 5t1s:B, 5t1s:C, 5t1s:D, 5t1t:A, 5t1t:B, 5t1t:C, 5t1t:D, 6thw:A, 6thw:B, 6thx:A, 6thx:B, 6thz:B, 6ti8:A, 6ti8:B, 6ti8:C, 6ti8:D, 6tia:A, 6tia:B, 8tvm:A, 8tvm:B, 8tvm:C, 8tvm:D, 8tvn:A, 8tvn:B, 8tvn:C, 8tvn:D, 8tx0:A, 8tx0:B, 8ucb:A, 8ucb:B, 8ucb:C, 8ucb:D, 8ucc:A, 8ucc:B, 5uiq:A, 5uiq:B, 5uiq:C, 5uir:A, 5uir:B, 5uis:B, 5uit:A, 5uit:B, 5uiu:A, 5uiu:B, 6uya:A, 6uya:B, 6uya:C, 6uya:D, 8v1o:A, 8v1o:B, 8v1o:C, 8v1o:D, 8v2f:A, 8v2f:B, 8v2f:D, 8v2l:A, 8v2l:B, 8v2l:C, 8v2l:D, 6vql:A, 6vql:B, 6vql:C, 6vql:D, 8w3w:A, 8w3w:B, 8w3w:C, 8w3w:D, 8w3x:A, 8w3x:B, 8w3x:C, 8w3x:D, 5w84:A, 5w85:A, 5w85:B, 8wtf:A, 4xs2:A, 4xs2:B, 4xs2:C, 4xs2:D, 4y73:A, 4y73:B, 4y73:C, 4y73:D, 4yo6:A, 4yo6:B, 4yo6:C, 4yo6:D, 4yp8:A, 4yp8:B, 4yp8:C, 4yp8:D, 4ztl:A, 4ztl:C, 4ztl:D, 4ztm:A, 4ztm:B, 4ztm:C, 4ztm:D, 4ztn:A, 4ztn:B, 4ztn:C, 4ztn:D
40 2kdz:A 107 45 0.2545 0.1308 0.3111 4.0
41 6kaj:A 446 28 0.2000 0.0247 0.3929 6.7 6kaj:B, 6kaj:C, 6kaj:D, 6kak:A, 6kak:B, 6kak:C, 6kak:D, 6kal:A, 6kal:B, 6kal:C, 6kal:D, 6kam:A, 6kam:B, 6kam:C, 6kam:D, 6kan:A, 6kan:B, 6kan:C, 6kan:D, 6l7s:A, 6l7s:B, 6l7s:C, 6l7s:D, 6l7t:A, 6l7t:B, 6l7t:C, 6l7t:D, 6l7u:A, 6l7u:B, 6l7u:C, 6l7u:D
42 3pse:A 164 20 0.1818 0.0610 0.5000 6.9 3phw:A, 3phw:C, 3phw:E, 3phw:G, 3phx:A, 3pt2:A, 5v5h:A
43 6gv4:C 241 28 0.1818 0.0415 0.3571 6.9
44 7q8y:A 294 21 0.0909 0.0170 0.2381 7.2 7q8y:B, 7q8z:A, 7q8z:B, 7q90:A, 7q90:B, 6u0k:B, 6u0k:A, 6vrf:A, 6vrf:B
45 3o32:A 256 30 0.1636 0.0352 0.3000 7.9 3o32:B, 3o5u:A, 3o5u:B, 3o6j:A, 3o6j:B, 3o6r:A, 3o6r:B, 1s9a:A, 1s9a:B
46 5xnl:3 220 24 0.2000 0.0500 0.4583 9.9 7oui:2, 7oui:6, 5xnl:7, 5xnm:3, 5xnm:7, 5xnn:3, 5xno:3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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