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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKNIIAGASLYLVFYAWVRWYEGVYGWSAGLDSFAPEFETYWMNFLYIEMVLEVLVASVLWGYIWKSRDRKVMSITPREE
LRRHFTHWTWLMMYGIAIYFGASYFTEQDGTWHQTIVRDTDFTPSHIIEFYLSYPIYIITGGASFLYAKTRLPTYQQGLS
LQYLVVVVGPFMILPNVGLNEWGHTFWFMEELFVAPLHYGFVFFGWSALGVLGVINIELGALSKLLKKDLA

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7s4l:C 231 231 1.0000 1.0000 1.0000 4.84e-171 7s4l:H, 7s4l:I
2 8oyi:C 236 216 0.7273 0.7119 0.7778 6.24e-126 8oyi:G, 8oyi:K, 7s4h:C, 7s4h:G, 7s4h:K, 7s4i:C, 7s4i:G, 7s4i:K, 7s4j:C, 7s4j:G, 7s4j:K, 7s4k:C, 7s4k:G, 7s4k:K, 8sqw:C, 8sqw:G, 8sqw:K, 8sr1:C, 8sr1:G, 8sr1:K, 8sr2:C, 8sr2:G, 8sr2:K, 8sr4:C, 8sr4:G, 8sr4:K, 7t4p:C, 7t4p:G, 7t4p:K
3 1yew:C 188 212 0.6234 0.7660 0.6792 5.99e-101 1yew:G, 1yew:K
4 3rgb:C 213 177 0.5887 0.6385 0.7684 5.87e-100 3rgb:K, 3rgb:G
5 7s4m:K 241 223 0.6190 0.5934 0.6413 6.01e-100 4pi2:C, 4pi2:G, 4pi2:K, 7s4m:G, 7s4m:C
6 4pi0:C 217 223 0.5195 0.5530 0.5381 6.87e-76 4phz:C, 4phz:G, 4phz:K, 4pi0:G, 4pi0:K, 3rfr:C, 3rfr:G, 3rfr:K
7 3chx:C 159 141 0.3810 0.5535 0.6241 1.75e-62 3chx:G, 3chx:K
8 6cxh:C 101 161 0.4372 1.0000 0.6273 3.78e-55
9 7dv6:A 304 57 0.0693 0.0526 0.2807 2.1 5e8y:A, 5e91:A, 5e92:A, 5qin:A
10 2f8n:G 108 43 0.0606 0.1296 0.3256 2.6 1u35:C, 1u35:G
11 3a8i:A 363 88 0.1039 0.0661 0.2727 5.1 3a8i:B, 3a8i:C, 3a8i:D
12 1z3h:A 925 44 0.0649 0.0162 0.3409 6.3
13 6sqg:E 212 50 0.0736 0.0802 0.3400 8.2 6sqg:A, 6sqg:B, 6sqg:C, 6sqg:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218