Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKLILDLDTGVDDTLAISYALGSPEMELIGITGTYGNVLMEQGVRNALAITDLLGHPEVKVYKGLSHASTKDSFEVLPIS
AFIHGDNGIGDVEIPDSPRKAEDESAVDFIIDSVKKYGKDLVYVPTGPMTNIAAALKKAPEIKDEIGKIVLMGGALTIHG
NVNAWTEANISQDPDAADILFRSGAPVTMIGLDVTLQTLLTYKETKQWRDLNTKAGKFLADMTDFYIKAYETTAPHLGGC
GLHDPLAVAVAVDPTLVTTLPINMQVDVEGPTRGRTIGDVTRLNDPVKTMQVAVGVDVPRFLNEFMTRISGLAKIA

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ba1:A 316 316 1.0000 1.0000 1.0000 0.0 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
2 6zk3:A 319 309 0.3481 0.3448 0.3560 6.36e-58 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
3 4kpo:A 317 319 0.3608 0.3596 0.3574 9.70e-57 4kpo:B, 6zk5:A, 6zk5:B
4 4kpn:A 318 318 0.3449 0.3428 0.3428 5.79e-55 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
5 2mas:A 313 304 0.3449 0.3482 0.3586 1.18e-52 2mas:B, 2mas:C, 2mas:D
6 1ezr:A 312 304 0.3608 0.3654 0.3750 6.92e-52 8ctm:A, 8ctm:B, 8ctm:C, 8ctm:D, 1ezr:B, 1ezr:C, 1ezr:D
7 5tsq:A 312 305 0.3513 0.3558 0.3639 2.72e-51
8 6ba0:A 312 306 0.3259 0.3301 0.3366 2.00e-46 6ba0:B, 6ba0:C, 6ba0:D
9 3g5i:A 305 312 0.3165 0.3279 0.3205 2.14e-46 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
10 3mkm:A 311 317 0.3386 0.3441 0.3375 2.29e-44 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
11 8qnd:A 297 312 0.3070 0.3266 0.3109 1.46e-38 8qnd:C, 8qnd:B, 8qnd:D
12 4wr2:A 308 299 0.2816 0.2890 0.2977 1.56e-36
13 3b9x:C 283 303 0.3101 0.3463 0.3234 2.25e-35
14 3t8i:A 306 313 0.2975 0.3072 0.3003 1.10e-32 3t8i:B, 3t8i:C, 3t8i:D
15 8db6:B 304 186 0.1930 0.2007 0.3280 5.05e-24 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
16 5mj7:A 322 298 0.2753 0.2702 0.2919 2.73e-19 5mj7:B
17 8rih:B 333 255 0.2215 0.2102 0.2745 9.88e-19 8rih:A
18 2c40:A 302 322 0.2627 0.2748 0.2578 8.36e-17 2c40:B
19 3fz0:B 338 300 0.2595 0.2426 0.2733 1.88e-16 3fz0:A, 3fz0:C, 3fz0:D
20 8oi7:A 346 317 0.2658 0.2428 0.2650 2.11e-16 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
21 4i72:A 328 297 0.2500 0.2409 0.2660 8.95e-10 4i70:A, 4i71:A, 4i72:B, 4i73:A, 4i73:B, 4i73:C, 4i73:D, 4i74:A, 4i75:A, 4i75:B
22 2ff2:B 327 223 0.1867 0.1804 0.2646 4.90e-06 3b9g:A, 3b9g:B, 3epw:A, 3epw:B, 3epx:A, 3epx:B, 2ff1:A, 2ff1:B, 2ff2:A, 1hoz:A, 1hoz:B, 1hp0:A, 1hp0:B, 1kic:A, 1kic:B, 1kie:A, 1kie:B, 1r4f:A, 1r4f:B
23 1eil:A 289 128 0.1076 0.1176 0.2656 0.033 1dhy:A, 1eiq:A, 1eir:A, 1kw3:B, 1kw6:B, 1kw8:B, 1kw9:B, 1kwc:B
24 1dbt:A 237 88 0.0823 0.1097 0.2955 0.63 1dbt:B, 1dbt:C
25 5dbj:E 437 205 0.1519 0.1098 0.2341 2.3 5dbj:A, 5dbj:B, 5dbj:C, 5dbj:D
26 1kmy:A 288 121 0.0918 0.1007 0.2397 2.3 1han:A, 1knd:A, 1knf:A, 1lgt:A, 1lkd:A
27 3duw:A 220 60 0.0538 0.0773 0.2833 3.4 3duw:B
28 1kfl:A 350 74 0.0728 0.0657 0.3108 4.0 5cks:A, 5cks:B, 5cks:C, 5cks:D, 8e0s:A, 8e0s:B, 8e0s:C, 8e0s:D, 8e0t:B, 8e0t:C, 8e0v:A, 8e0v:B, 8e0v:C, 8e0v:D, 8e0x:A, 8e0x:B, 8e0x:C, 8e0x:D, 8e0y:C, 1gg1:A, 1gg1:B, 1gg1:C, 1gg1:D, 1kfl:B, 1kfl:C, 1kfl:D, 1kfl:E, 1kfl:F, 1kfl:G, 1kfl:H, 1n8f:A, 1n8f:B, 1n8f:C, 1n8f:D, 1qr7:A, 1qr7:B, 1qr7:C, 1qr7:D, 7rud:B, 7rud:C, 7rud:D, 7rue:A, 7rue:B, 7rue:C, 7rue:D
29 6rm8:A 655 87 0.0791 0.0382 0.2874 4.2 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
30 1l5j:A 862 91 0.0823 0.0302 0.2857 5.3 1l5j:B
31 3wag:B 401 92 0.0696 0.0549 0.2391 5.6 3wad:A, 3wag:A
32 7u7h:A 423 64 0.0601 0.0449 0.2969 7.8 7u7h:B
33 5t7l:A 68 34 0.0316 0.1471 0.2941 8.3 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
34 3tqx:A 396 100 0.0823 0.0657 0.2600 9.1 3tqx:B
35 5n8o:A 1432 35 0.0348 0.0077 0.3143 10.0 4l0j:A, 1p4d:A, 1p4d:B, 1p4d:C, 2q7t:A, 2q7t:B, 2q7u:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218