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BioLiP Library
>protein
KKGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8zmy:A 98 54 0.9636 0.5408 0.9815 2.30e-28 8a9l:A, 9ijp:C, 9ijp:L, 7lc9:K, 7lc9:G, 7wmm:A, 7wmm:E, 7wmm:C, 7wmm:D, 7wmm:F, 8x7l:F, 8x7l:H, 8x7l:I, 8x7m:F, 8x7m:H, 8x7m:G, 8x7m:C, 8x7m:D, 8x7m:J, 8x7m:E, 8x7m:A, 8x7m:B, 8x7m:I, 8x7o:A, 8x7o:E, 8x7o:C, 8x7o:D, 8x7o:G, 8x7p:A, 8x7p:B, 8x7p:C, 8x7p:D, 8x7p:E, 8x7q:A, 8x7q:B, 8x7q:E, 8x7q:I, 8x7q:J, 8x7q:C, 8x7q:F, 8x7q:G, 8x7q:H, 8x7r:G, 8x7r:D, 8x7r:F, 8x7r:C, 8x7r:A, 8x7r:J, 8x7r:E, 8x7r:B, 8x7r:H, 8x7r:I, 7yk8:K, 7yk8:L, 7yk8:B, 7ynf:A, 7ynf:B, 7ynf:C, 7ynf:D, 7ynm:A, 7ynm:C, 7ynm:B, 7ynm:D, 7ynm:J, 7ynm:G, 7ynm:I, 7ynm:H, 7ynp:D, 7ynp:F, 8zli:A, 8zli:B, 8zli:E, 8zli:J, 8zli:I, 8zli:C, 8zli:D, 8zli:F, 8zli:L, 8zli:K, 8zlo:A, 8zlo:E, 8zlo:C, 8zlo:F, 8zlo:G, 8zlo:H, 8zlo:O, 8zlo:D, 8zlo:I, 8zlo:J, 8zlo:T, 8zlo:B, 8zmy:B, 8zmy:C, 8zmy:E, 8zmy:F, 8zmy:G, 8zmy:H, 8zmy:I, 8zmy:K, 8zmy:J, 8zmy:D, 8zmy:L
2 7zg5:C 84 27 0.2000 0.1310 0.4074 1.1
3 4ojl:C 759 36 0.2182 0.0158 0.3333 4.7 4ojl:A, 4ojl:B, 4ojo:A, 4ojo:B, 4ojp:A, 4ojp:B, 4ojp:C
4 2oby:A 334 38 0.2727 0.0449 0.3947 5.1 2j8z:A, 2oby:B, 2oby:C, 2oby:D, 2oby:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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