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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPND
HGSGEDCVTIVDNGLWNDISCQASHTAVCEFPA

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1afa:1 154 118 0.9646 0.7078 0.9237 3.68e-78 1afa:2, 1afa:3, 1afb:1, 1afb:2, 1afb:3, 1afd:1, 1afd:2, 1afd:3, 1bch:1, 1bch:2, 1bch:3, 1bcj:1, 1bcj:2, 1bcj:3, 1fif:A, 1fif:B, 1fif:C, 1fih:A, 1fih:B, 1fih:C, 1kmb:1, 1kmb:2, 1kmb:3, 2kmb:1, 2kmb:2, 2kmb:3, 3kmb:1, 3kmb:3, 3kmb:2, 4kmb:1, 4kmb:2, 4kmb:3, 1kwt:A, 1kwt:B, 1kwt:C, 1kwu:A, 1kwu:B, 1kwu:C, 1kwv:A, 1kwv:B, 1kwv:C, 1kww:A, 1kww:B, 1kww:C, 1kwx:A, 1kwx:B, 1kwx:C, 1kwy:A, 1kwy:B, 1kwy:C, 1kwz:A, 1kwz:B, 1kwz:C, 1kx0:A, 1kx0:B, 1kx0:C, 1kx1:C, 1kx1:F, 1kx1:A, 1kx1:B, 1kx1:D, 1kx1:E, 2msb:B, 2msb:A, 1rtm:1, 1rtm:2, 1rtm:3
2 1hup:A 141 111 0.6195 0.4965 0.6306 4.27e-49
3 1kza:1 115 111 0.5841 0.5739 0.5946 1.41e-46 1kza:2, 1kzb:1, 1kzb:2, 1kzc:1, 1kzc:2, 1kzd:1, 1kzd:2, 1kze:1, 1kze:2, 1rdi:1, 1rdi:2, 1rdj:1, 1rdj:2, 1rdk:1, 1rdk:2, 1rdl:1, 1rdl:2, 1rdm:1, 1rdm:2, 1rdn:1, 1rdn:2, 1rdo:1, 1rdo:2
4 2ric:C 158 114 0.4956 0.3544 0.4912 1.10e-31 1b08:A, 1b08:B, 1b08:C, 3dbz:A, 3dbz:B, 3dbz:C, 4e52:B, 4e52:C, 4e52:A, 3g81:A, 3g81:B, 3g81:C, 3g83:A, 3g83:B, 3g83:C, 3g84:A, 3g84:B, 3g84:C, 2ggu:A, 2ggu:B, 2ggu:C, 2ggx:A, 2ggx:B, 2ggx:C, 3ikn:A, 3ikn:B, 3ikn:C, 3ikp:A, 3ikp:B, 3ikp:C, 3ikq:A, 3ikq:B, 3ikq:C, 3ikr:A, 3ikr:B, 3ikr:C, 4m17:A, 4m17:B, 4m17:C, 4m17:D, 4m17:E, 4m17:F, 4m17:G, 4m17:H, 4m17:I, 4m17:J, 4m17:K, 4m17:L, 4m18:A, 4m18:E, 4m18:B, 4m18:C, 4m18:D, 4m18:L, 4m18:F, 4m18:G, 4m18:H, 4m18:I, 4m18:J, 4m18:K, 2orj:A, 2orj:B, 2orj:C, 2ork:A, 2ork:B, 2ork:C, 2os9:A, 2os9:B, 2os9:C, 5oxr:B, 5oxr:C, 5oxr:A, 5oxs:A, 5oxs:B, 5oxs:C, 1pw9:A, 1pw9:B, 1pw9:C, 1pwb:A, 1pwb:B, 1pwb:C, 2ria:A, 2ria:B, 2ria:C, 2rib:A, 2rib:B, 2rib:C, 2ric:B, 2ric:A, 2rid:A, 2rid:B, 2rid:C, 2rie:A, 2rie:B, 2rie:C
5 6ryj:A 122 116 0.4071 0.3770 0.3966 1.89e-25 6ryg:A, 6rym:A, 6ryn:A
6 3pak:A 145 113 0.3894 0.3034 0.3894 3.69e-25 5ffr:A, 5ffs:A, 5fft:A, 3paq:A, 3par:A, 3pbf:A, 1r13:A, 1r14:A, 4wr9:A, 4wrc:A, 4wre:A, 4wrf:A, 4wuw:A, 4wux:A
7 6bbe:A 155 117 0.3982 0.2903 0.3846 4.62e-23 6bbd:A, 4dn8:A
8 2ox9:C 131 115 0.2920 0.2519 0.2870 1.86e-15 2ox9:A, 2ox9:B, 2ox9:D
9 6pwr:A 129 112 0.3097 0.2713 0.3125 1.92e-15 6pws:A, 6pwt:A
10 2ox8:A 129 108 0.2920 0.2558 0.3056 4.40e-15 2ox8:B, 2ox8:C, 2ox8:D
11 4yli:D 155 115 0.2920 0.2129 0.2870 7.53e-15 4yli:A, 4yli:B, 4yli:C, 4yli:E, 4yli:F, 4ymd:A, 4ymd:B, 4ymd:D, 4ymd:F, 4ymd:C, 4ymd:E
12 4gko:L 136 87 0.2389 0.1985 0.3103 1.19e-12 4g9a:A, 4g9a:B, 4g9a:C, 4g9a:D, 4gko:G, 4gko:H, 4gko:I, 4gko:J, 4gko:K, 2h2t:B
13 8h4v:A 148 101 0.3097 0.2365 0.3465 5.47e-12 8h4v:B, 8hb5:A, 5kth:A, 5kti:A, 4kzv:A, 4kzv:B, 4kzw:A, 4kzw:B, 4zrv:A, 4zrv:C, 4zrv:B, 4zrw:A
14 1sl6:A 168 117 0.3274 0.2202 0.3162 8.63e-12 1k9j:A, 1sl6:B, 1sl6:C, 1sl6:D, 1sl6:E, 1sl6:F, 1xph:A
15 1htn:A 156 121 0.3097 0.2244 0.2893 1.98e-11 1tn3:A
16 3wh2:A 132 99 0.2743 0.2348 0.3131 6.07e-11 3wh3:A
17 1tdq:B 126 104 0.2301 0.2063 0.2500 9.90e-11
18 6py1:A 130 115 0.2743 0.2385 0.2696 2.70e-10 6puv:A, 6w12:A, 6xiy:A
19 3whd:C 148 93 0.2832 0.2162 0.3441 3.33e-10 3whd:A
20 5jq1:A 130 104 0.2389 0.2077 0.2596 9.27e-10 1dv8:A, 5jpv:A, 5jpv:B, 5jq1:B, 8ts0:A, 6yau:A
21 6jjj:A 151 117 0.2655 0.1987 0.2564 1.85e-09 6jjj:B, 6jjj:C, 6jjj:D, 6jjj:E, 6jjj:F
22 1egg:B 144 111 0.2655 0.2083 0.2703 3.07e-09 1egg:A, 1egi:A, 1egi:B, 7jub:A, 7juc:A, 7jud:A, 7jud:B, 7jue:A, 7juf:A, 7juf:B, 7jug:A, 7juh:A, 7l61:A, 7l62:A, 7l63:A, 7l64:A, 7l65:A, 7l66:A, 7l67:A, 7l68:A, 7l68:B
23 8urf:A 128 115 0.2743 0.2422 0.2696 2.76e-08
24 4wqq:A 141 66 0.1858 0.1489 0.3182 7.66e-08 1wmy:A, 1wmy:B, 1wmz:A, 1wmz:B, 1wmz:C, 1wmz:D, 4wqq:B, 4wqq:C, 4wqq:D
25 2vuv:A 129 117 0.2566 0.2248 0.2479 1.50e-07 2vuz:A
26 3vyk:A 128 115 0.2743 0.2422 0.2696 3.94e-06
27 5vyb:A 143 116 0.2832 0.2238 0.2759 4.94e-06
28 5e4l:B 386 63 0.1858 0.0544 0.3333 1.90e-05
29 5e4l:B 386 68 0.1770 0.0518 0.2941 0.004
30 5e4l:A 428 108 0.2832 0.0748 0.2963 2.39e-05
31 5e4l:A 428 68 0.1770 0.0467 0.2941 0.004
32 5e4k:A 424 73 0.2212 0.0590 0.3425 2.60e-05
33 5e4k:A 424 68 0.1770 0.0472 0.2941 0.004
34 4c16:A 280 115 0.2832 0.1143 0.2783 3.29e-05 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
35 5f2q:B 135 71 0.1504 0.1259 0.2394 1.07e-04 5f2q:A, 5f2q:C, 5f2q:D, 5f2q:E, 5f2q:F, 5f2q:G, 5f2q:H, 5f2q:I, 5f2q:J, 1jzn:A, 1jzn:B, 1jzn:C, 1jzn:D, 1jzn:E, 1muq:B, 1muq:A, 1muq:C, 1muq:D, 1muq:E
36 3cfw:A 156 108 0.2743 0.1987 0.2870 3.26e-04 5vc1:A
37 2py2:A 127 117 0.1947 0.1732 0.1880 6.70e-04 2py2:B, 2py2:C, 2py2:D, 2py2:E, 2py2:F
38 5k8y:A 136 71 0.1770 0.1471 0.2817 0.004 5k8y:B, 5m62:A, 5m62:B
39 3kqg:A 169 100 0.2301 0.1538 0.2600 0.011 4ak8:A, 4ak8:B, 4ak8:C, 4ak8:D, 3c22:A, 3c22:B, 3c22:C, 3c22:D, 5g6u:A, 5g6u:B, 5g6u:D, 5g6u:C, 3kqg:B, 3kqg:C, 3kqg:D, 3kqg:E, 3kqg:F, 4n32:A, 4n32:B, 4n32:C, 4n32:D, 4n33:A, 4n33:B, 4n33:C, 4n33:D, 4n34:A, 4n34:B, 4n34:C, 4n34:D, 4n35:A, 4n35:B, 4n35:C, 4n35:D, 4n36:A, 4n36:B, 4n36:C, 4n36:D, 4n37:A, 4n37:B, 4n37:C, 4n37:D, 4n38:A, 4n38:B, 4n38:C, 4n38:D, 3p5d:A, 3p5d:B, 3p5d:C, 3p5d:D, 3p5e:A, 3p5e:B, 3p5e:C, 3p5e:D, 3p5f:B, 3p5f:C, 3p5f:A, 3p5f:D, 3p5g:A, 3p5g:B, 3p5g:C, 3p5g:D, 3p5h:B, 3p5h:D, 3p5h:A, 3p5h:C, 3p5i:A, 3p5i:B, 3p5i:C, 3p5i:D, 3p7f:A, 3p7f:B, 3p7f:C, 3p7f:D, 3p7g:A, 3p7g:B, 3p7g:C, 3p7g:D, 3p7h:A, 3p7h:B, 3p7h:C, 3p7h:D, 7ytq:A, 7ytq:B, 7ytq:C, 7ytq:D
40 5b1w:A 130 101 0.2301 0.2000 0.2574 0.013 5b1w:B, 5b1w:C, 5b1w:D, 5b1x:A, 5b1x:B, 5b1x:C, 5b1x:D
41 5xts:A 460 68 0.1504 0.0370 0.2500 0.013 5xtw:A, 5xtw:C, 5xtw:D, 5xtw:E, 5xtw:F, 5xtw:H
42 6lfj:A 133 106 0.2478 0.2105 0.2642 0.014 6kzr:A, 6kzr:B, 6lfj:B, 6lkr:A, 6lkr:B
43 3alu:A 157 136 0.2389 0.1720 0.1985 0.017 3als:A, 3als:B, 3als:C, 3als:D, 3alt:A, 3alt:B, 3alt:C, 3alt:D, 3alu:B, 3alu:C, 3alu:D
44 1g1q:A 160 43 0.1504 0.1062 0.3953 0.025 1g1q:B, 1g1q:C, 1g1q:D, 1g1r:A, 1g1r:B, 1g1r:D, 1g1r:C, 1g1s:B, 1g1s:A
45 4zes:A 147 107 0.2389 0.1837 0.2523 0.028 4zes:B, 4zet:A, 4zet:B
46 6jk4:A 126 112 0.1770 0.1587 0.1786 0.036
47 1qdd:A 144 67 0.1416 0.1111 0.2388 0.29
48 4m87:A 257 51 0.1858 0.0817 0.4118 0.92 4m87:B, 4m89:A, 4m89:B
49 1efg:A 592 40 0.1504 0.0287 0.4250 1.0 2efg:A
50 2bv3:A 632 40 0.1504 0.0269 0.4250 1.1 1dar:A
51 5hau:1z 730 40 0.1504 0.0233 0.4250 1.1 2bm0:A, 2bm1:A, 1fnm:A, 6gzq:H1, 6gzx:H1, 6gzx:H2, 6gzz:H1, 6gzz:H2, 5hau:2z, 4m1k:A, 4myt:A, 4myu:A, 2om7:L, 5ot7:U, 6q95:G, 6ucq:1v, 6ucq:2v, 4v5f:AY, 4v5f:CY, 4v5m:AY, 4v5n:AY, 4v6t:AY, 4v8u:AY, 4v8u:CY, 4v90:AY, 4v9j:AY, 4v9j:CY, 4v9k:AY, 4v9k:CY, 4v9l:AY, 4v9l:CY, 4v9m:AY, 4v9m:CY, 4w29:AY, 4w29:CY, 4wpo:BZ, 4wpo:DZ, 4wqf:BZ, 4wqf:DZ, 4wqu:BZ, 4wqu:DZ, 4wqy:BZ, 4wqy:DZ
52 7k7m:B 757 25 0.0973 0.0145 0.4400 1.7 7k7m:A, 7n6b:A
53 6aji:A 873 25 0.0973 0.0126 0.4400 1.7
54 6ajf:A 901 25 0.0973 0.0122 0.4400 1.7 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
55 6xwb:A 319 45 0.1239 0.0439 0.3111 3.3 6xwb:B
56 7p2y:D 463 26 0.0885 0.0216 0.3846 3.4 7p3n:E, 7p3w:F, 7yry:D
57 4ce5:A 325 45 0.1150 0.0400 0.2889 3.8 4ce5:B, 8x1f:A, 8x1f:B, 7xg5:A, 7xg5:B, 8xiy:A, 8xiy:B
58 1iod:B 123 67 0.1327 0.1220 0.2239 5.5 1wt9:B, 1y17:B
59 7xva:A 226 38 0.0885 0.0442 0.2632 8.2
60 1bj3:B 123 77 0.1416 0.1301 0.2078 9.8 1ixx:B, 1ixx:D, 1ixx:F, 1j34:B, 1j35:B, 1x2t:B, 1x2t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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