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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS
LHIINGDEYEKIVREVQLLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDHM
MTAQRFPARVGAVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGEN
PAIRAMFVAHLHQALNM

The query sequence (length=257) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2xwp:A 257 257 1.0000 1.0000 1.0000 0.0
2 2xvz:A 263 259 0.3774 0.3688 0.3745 1.65e-42 2xvx:A, 2xvy:A
3 7dog:A 319 46 0.0661 0.0533 0.3696 3.3 7dog:B
4 7vrs:A 444 86 0.0973 0.0563 0.2907 3.6 7vrs:B
5 4ovy:A 305 101 0.1051 0.0885 0.2673 3.9
6 1djg:B 561 44 0.0506 0.0232 0.2955 4.6 1djg:A, 1djh:A, 1djh:B, 1dji:A, 1dji:B, 1djw:A, 1djw:B, 1djx:A, 1djx:B, 1djy:A, 1djy:B, 1djz:A, 1djz:B
7 4z3w:F 170 19 0.0428 0.0647 0.5789 6.1 4z3w:E, 4z3w:G, 4z3w:H, 4z3x:E, 4z3x:F, 4z3x:G, 4z3x:H, 4z3y:E, 4z3y:F, 4z3y:G, 4z3y:H, 4z3z:E, 4z3z:F, 4z3z:G, 4z3z:H, 4z40:E, 4z40:F, 4z40:G, 4z40:H
8 4a34:I 142 53 0.0623 0.1127 0.3019 7.7 4a34:A, 4a34:B, 4a34:C, 4a34:D, 4a34:E, 4a34:F, 4a34:G, 4a34:H, 4a34:J, 4a34:K, 4a34:O, 4a34:L, 4a34:M, 4a34:N, 4a34:P, 4a34:Q, 4a34:R, 4a34:S, 4a34:T
9 6fb3:A 1836 47 0.0623 0.0087 0.3404 8.1 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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