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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KITRIRAFYMRKVKSLVEQVARDYVRLLKFGQSLFQCKQLKRAALGRMATIVKK

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r7c:b 54 54 1.0000 1.0000 1.0000 7.04e-33
2 8euy:b 120 66 0.7593 0.3417 0.6212 1.59e-21
3 6ylg:b 613 104 0.9815 0.0865 0.5096 3.18e-21 7nac:b, 7of1:b, 7r7a:b, 6ylh:b
4 8v83:b 423 105 1.0000 0.1277 0.5143 5.94e-21 6elz:b, 6em1:b, 6em5:b, 7ohp:b, 7ohr:b, 7ohs:b, 7ohu:b, 7ohv:b, 8v84:b
5 8hfr:rA 647 45 0.7593 0.0634 0.9111 5.91e-20 7bt6:b, 7btb:b, 6c0f:W, 6ft6:b, 3jct:b, 5jcs:o, 6m62:b, 6n8j:b, 6n8k:b, 7nad:b, 7oh3:b, 7ohq:b, 7oht:b, 7r72:b, 7u0h:b, 7ug6:b, 7uoo:b, 7uqb:b, 7uqz:b, 7v08:b, 4v7f:o, 8v87:b, 6ylx:b, 6yly:b, 7z34:b
6 8eup:b 151 80 0.7593 0.2715 0.5125 4.23e-19
7 8etc:b 415 45 0.5926 0.0771 0.7111 4.54e-17 8esq:b, 8etj:b
8 8eti:b 391 45 0.5926 0.0818 0.7111 4.83e-17 8esr:b, 8etg:b
9 8pv1:CH 627 41 0.5556 0.0478 0.7317 1.64e-16 8i9r:CH, 8i9t:CH, 8i9v:CH, 8i9w:CH, 8i9x:CH, 8i9y:CH, 8i9z:CH, 8ia0:CH, 8pv2:CH, 8pv3:CH, 8pv4:CH, 8pv5:CH, 8pv6:CH, 8pv7:CH, 8pv8:CH, 8pvk:CH, 8pvl:CH
10 8fl4:SR 593 41 0.5185 0.0472 0.6829 2.17e-15 8fkr:SR, 8fks:SR
11 8ir1:4 620 41 0.5185 0.0452 0.6829 2.28e-15 8fkt:SR, 8fku:SR, 8fkv:SR, 8fkw:SR, 8fkx:SR, 8fky:SR, 8fkz:SR, 8fl0:SR, 8fl2:SR, 8fl3:SR, 8fl6:SR, 8fl7:SR, 8fl9:SR, 8fla:SR, 8flb:SR, 8flc:SR, 8fld:SR, 8fle:SR, 8flf:SR, 8idt:4, 8idy:4, 8ie3:4, 8ine:4, 8inf:4, 8ink:4, 8ipd:4, 8ipx:4, 8ipy:4, 8ir3:4, 6lss:4, 6lu8:4
12 7ohw:b 259 45 0.6111 0.1274 0.7333 8.10e-13
13 7ohy:b 375 89 0.7037 0.1013 0.4270 1.40e-10
14 7naf:b 74 18 0.2778 0.2027 0.8333 0.010
15 7ohx:b 248 12 0.2222 0.0484 1.0000 0.58

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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