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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGIIHKTAKKK
LTYQFSGEVLGR

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8eo4:F 95 92 0.9457 0.9158 0.9457 4.87e-58 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
2 1awc:A 110 88 0.3804 0.3182 0.3977 4.51e-15
3 6da1:B 138 89 0.3696 0.2464 0.3820 4.71e-13 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
4 4bqa:A 132 89 0.3587 0.2500 0.3708 1.48e-12
5 1dux:C 86 84 0.3587 0.3837 0.3929 2.67e-12 1dux:F
6 7jsa:J 88 86 0.3587 0.3750 0.3837 4.72e-12 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
7 4uuv:A 96 87 0.3478 0.3333 0.3678 1.53e-11 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
8 1yo5:C 88 87 0.3804 0.3977 0.4023 2.83e-11
9 8bzm:H 88 85 0.3478 0.3636 0.3765 2.06e-10 8bzm:B
10 8e67:F 97 82 0.3370 0.3196 0.3780 2.46e-10 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
11 3jtg:A 95 83 0.3043 0.2947 0.3373 5.13e-10
12 3zp5:A 92 92 0.3370 0.3370 0.3370 8.04e-09
13 6vgd:A 98 85 0.3261 0.3061 0.3529 8.65e-09 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
14 1hbx:G 112 76 0.3152 0.2589 0.3816 6.15e-07 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
15 1t90:A 484 35 0.1413 0.0269 0.3714 0.46 1t90:B, 1t90:C, 1t90:D
16 1os1:A 537 19 0.0870 0.0149 0.4211 2.2 1aq2:A, 6asi:A, 6asm:A, 6asn:A, 6at2:A, 6at3:A, 6at3:B, 6at4:A, 6at4:B, 1ayl:A, 6com:A, 6crt:A, 1k3c:A, 1k3d:A, 2olq:A, 2olr:A, 2pxz:X, 2py7:X, 6v2l:A, 6v2m:A, 6v2n:A
17 8ag6:B 975 19 0.1087 0.0103 0.5263 4.9 2o8b:B, 2o8c:B, 2o8d:B, 2o8e:B, 2o8f:B
18 6mo6:B 414 23 0.1087 0.0242 0.4348 5.0 8dhk:A, 8dhk:B, 6mo6:A, 6mo6:C, 6mo6:D, 6mp5:A, 6mp5:B, 6mp5:C, 6mp5:D, 6oi5:A, 6oi5:B, 6oi6:A, 6oi6:B, 6oib:A, 6oib:B, 6oic:A, 6oic:B, 6wh6:A, 6wh6:B
19 4fbg:A 399 43 0.1304 0.0301 0.2791 9.0 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218