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I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
KIPGLKIDQKIRGQMPERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQIS
DKTDPGWVDDSRIQWG

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2djh:A 96 96 1.0000 1.0000 1.0000 6.32e-66 2a8k:D, 2a8k:C, 2a8k:B, 2a8k:A, 3vj7:A
2 8kd6:E 301 50 0.1771 0.0565 0.3400 0.98 8kd2:E
3 5li0:D 275 23 0.1250 0.0436 0.5217 1.0 7asm:C, 7asn:F, 7asp:C, 6ddd:B, 6ddg:B, 6fxc:AC, 6fxc:BC, 5hkv:A, 5hl7:A, 6hma:C, 5nd8:D, 5nd9:D, 5ngm:AC, 7nhl:G, 7nhm:G, 5nrg:A, 8p2f:G, 8p2g:G, 8p2h:G, 7p48:C, 6s0x:C, 6s0z:C, 6s12:C, 6s13:C, 6sj6:D, 5t7v:L2, 5tcu:L2, 7ttu:B, 7ttw:B, 4wce:A, 4wf9:A, 4wfa:A, 4wfb:A, 6wqn:B, 6wqq:B, 6wrs:B, 6wru:B, 8y36:C, 8y37:C, 8y38:C, 8y39:C, 6yef:D
4 4v4p:AD 173 27 0.1354 0.0751 0.4815 2.2 4v4r:BD, 4v4s:BD, 4v4t:BD
5 5t9c:E 263 51 0.1458 0.0532 0.2745 4.4 5t91:A, 5t9b:G
6 5imt:A 460 59 0.1354 0.0283 0.2203 4.9
7 5myj:BD 272 23 0.1250 0.0441 0.5217 4.9
8 5oas:A 728 20 0.1042 0.0137 0.5000 5.2 5vfb:A, 5vfb:B
9 3j3v:C 277 23 0.1250 0.0433 0.5217 5.5 7aqc:C, 7aqd:C, 7as8:E, 7as9:E, 8buu:C, 6ha1:C, 6ha8:C, 6htq:C, 3j3w:C, 3j9w:BD, 5njt:W, 7o5b:Z, 7ope:E, 6ppf:C, 6ppk:C, 6pvk:C, 8qcq:C, 7qgu:C, 7qh4:C, 8qpp:Z, 7qv1:C, 7qv2:C, 7qv3:C, 8r55:Z, 8s1p:C, 8s1u:C, 7s9u:C, 7sae:C, 6tnn:W, 6tpq:W
10 5xxz:B 1310 34 0.1250 0.0092 0.3529 5.7
11 5xya:A 1358 34 0.1250 0.0088 0.3529 5.7 5xxz:A
12 6vjb:A 1346 34 0.1250 0.0089 0.3529 5.9
13 7edd:A 1394 34 0.1250 0.0086 0.3529 5.9 5xyr:A
14 8uu8:C 274 23 0.1146 0.0401 0.4783 8.1 8a57:G, 8a5i:G, 8a63:G, 7nhn:G, 8uu4:C, 8uu5:C, 8uu6:C, 8uu7:C, 8uu9:C, 8uua:C
15 8edi:A 200 23 0.1042 0.0500 0.4348 8.2 8edi:B
16 4z0g:B 390 37 0.1458 0.0359 0.3784 8.6 4xtd:A, 4xtd:B, 4xti:A, 4xti:B, 4z0g:A
17 8ebw:H 532 40 0.1458 0.0263 0.3500 8.7 8ebs:H, 8ebt:H, 8ebv:H, 8ebx:H
18 6o8w:C 275 23 0.1146 0.0400 0.4783 9.3 7nhk:G, 6o8x:C, 6o8y:C, 6o8z:C, 6o90:C, 7p7q:G, 7p7r:G, 7p7s:G, 7p7t:G, 7p7u:G, 6w6p:C
19 7yi2:D 321 38 0.1354 0.0405 0.3421 9.5 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
20 7cta:A 329 30 0.1146 0.0334 0.3667 9.5 7ct9:A, 7ct9:B, 7cta:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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