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BioLiP
>protein
KIFAVRVTHGQEETTAKLIYSKVRTYNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFL
E

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oki:G 81 81 1.0000 1.0000 1.0000 1.32e-54
2 4zn3:A 147 79 0.4444 0.2449 0.4557 2.20e-18
3 8w8e:Z 360 87 0.3704 0.0833 0.3448 1.35e-05 8w8f:Z
4 5oik:Z 488 87 0.3704 0.0615 0.3448 1.36e-05 6gml:Z, 8p4f:Z, 8rbx:Z, 7ycx:j
5 4a8x:A 88 57 0.2222 0.2045 0.3158 0.10
6 5xon:W 329 63 0.2222 0.0547 0.2857 0.29
7 6ir9:W 275 63 0.2222 0.0655 0.2857 0.30 6j4w:W, 6j4x:W, 6j4y:W, 6j4z:W, 6j50:W, 6j51:W, 8jh2:W, 7wbv:W, 7wbw:W, 7wbx:W
8 7xn7:W 533 63 0.2222 0.0338 0.2857 0.37 7xse:W, 7xsx:W, 7xt7:W, 7xtd:W, 7xti:W
9 7nkx:Z 156 66 0.2346 0.1218 0.2879 0.74
10 2exu:A 192 66 0.2346 0.0990 0.2879 0.78
11 1kwg:A 644 49 0.1852 0.0233 0.3061 0.81 1kwk:A
12 3c66:A 529 52 0.1358 0.0208 0.2115 1.0 3c66:B, 1fa0:A, 1fa0:B, 2q66:A
13 3a3w:A 329 16 0.1111 0.0274 0.5625 2.4 3a3x:A, 3a4j:A, 3c86:A, 2d2g:A, 2d2h:A, 2d2j:A, 4np7:A, 3ood:A, 3oqe:A, 2r1k:A, 2r1l:A, 2r1m:A, 2r1n:A, 2r1p:A, 3so7:A, 5vej:A, 5w7h:A, 5w7h:B, 3wml:A
14 1bw9:A 350 47 0.1975 0.0457 0.3404 3.0 1bw9:B, 1bxg:A, 1bxg:B, 1c1d:A, 1c1d:B, 1c1x:A, 1c1x:B
15 2eh1:B 89 34 0.1728 0.1573 0.4118 4.5
16 1kij:A 384 41 0.1481 0.0312 0.2927 4.5 6enh:A, 1kij:B
17 6c8v:A 312 24 0.1358 0.0353 0.4583 6.6
18 7cum:B 675 43 0.1358 0.0163 0.2558 7.0 7c7q:B, 6w2x:B, 6wiv:B
19 6uo8:B 696 43 0.1358 0.0158 0.2558 7.1 7ca3:B, 7eb2:D
20 8ic6:B 855 43 0.2099 0.0199 0.3953 9.8 8ic6:A, 8ic7:B, 8ic7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417