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BioLiP
>protein
KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gcc:A 63 63 1.0000 1.0000 1.0000 1.61e-41
2 5wx9:A 131 58 0.6825 0.3282 0.7414 1.11e-26
3 7et4:D 104 61 0.4286 0.2596 0.4426 9.96e-10 7et4:A, 7et4:G, 7et4:J
4 7wq5:A 172 66 0.4127 0.1512 0.3939 1.04e-07 7wq5:B
5 7wq5:A 172 60 0.4127 0.1512 0.4333 0.49 7wq5:B
6 1cyg:A 680 32 0.1587 0.0147 0.3125 2.0
7 7wic:R 288 31 0.1746 0.0382 0.3548 3.0 7t10:R, 7t11:R, 7wig:R, 7wj5:R, 7xat:A, 7xau:A, 7xav:A, 7xmr:R, 7y24:E, 7y26:E, 7y27:E, 7yac:E, 7yae:E
8 7xn9:A 476 31 0.1746 0.0231 0.3548 3.1 2b46:X, 1bcx:A, 1bvv:A, 1c5i:A, 8qxy:B, 8qxy:A, 8qy0:B, 8qy0:A, 8qy1:A, 8qy1:B, 8qy2:A, 8qy3:A, 2qz3:A, 2qz3:B, 5tzo:A, 5tzo:B, 5tzo:C, 3vzm:A, 3vzn:A, 3vzn:B, 3vzo:A, 7xna:A
9 3bdn:A 234 30 0.1746 0.0470 0.3667 3.2 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
10 8ity:V 361 21 0.1746 0.0305 0.5238 5.0 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
11 8ca1:B 589 32 0.2063 0.0221 0.4062 6.1 8ca1:A
12 6u83:A 154 22 0.1270 0.0519 0.3636 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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