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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KGMKIVTSFYPIYAMVKEVSGDLNDVRMIQSSSGIHSFEPSANDIAAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVL
EASEGMTLERVPGLTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTF
VTQLTAFSYLAKRFGLNQLGIAGISEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNPLESDPQ
NDKTYLENLEENMSILAEELK

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7lm7:A 270 271 0.9808 0.9481 0.9446 0.0 3cx3:A, 3cx3:B, 7lm5:A, 7lm6:A
2 4h0f:A 264 264 0.6743 0.6667 0.6667 9.87e-123 3gi1:A, 3gi1:B, 4h0f:B, 3hjt:A, 3hjt:B
3 7jj9:A 461 263 0.4253 0.2408 0.4221 2.97e-58 7jj8:B, 7jj8:A, 7jj8:C, 7jj8:D, 7jja:A, 7jjb:A
4 2o1e:A 266 266 0.3946 0.3872 0.3872 1.58e-54 2o1e:B
5 7me2:A 281 265 0.2835 0.2633 0.2792 1.51e-27 7me1:A, 7me1:B, 7me2:B, 7me3:A, 7me3:B, 6q1d:A, 5uxs:A, 5uxu:A, 5uy0:A, 5uy4:A, 5uy5:A, 5uya:A, 5uyb:A, 5uyc:A, 5uyd:A, 5uye:A, 5uyf:A, 5uyg:A, 5uyh:A, 5uyv:A, 5uyw:A
6 1xvl:A 279 267 0.2912 0.2724 0.2846 8.60e-27 4irm:A, 4irm:B, 3ujp:A, 3ujp:B, 3ujp:C, 1xvl:B
7 1pq4:B 264 248 0.2452 0.2424 0.2581 1.00e-25 2ov3:A, 1pq4:A
8 6ru4:A 276 274 0.2835 0.2681 0.2701 7.97e-25 6r5s:A, 6r5s:B, 6ru4:B, 6ru4:C, 6ru4:D
9 3hh8:A 280 239 0.2720 0.2536 0.2971 3.05e-22 8yj6:C, 8yj7:B, 8yj7:D, 8yj7:A, 8yj7:C, 8yj8:A, 8yj8:B
10 5i4k:A 280 240 0.2644 0.2464 0.2875 7.58e-22
11 4oxq:A 278 277 0.2644 0.2482 0.2491 8.82e-22 4oxr:A, 4oxr:B
12 4k3v:B 278 238 0.2452 0.2302 0.2689 3.25e-20 5hdq:A, 4nno:A
13 1psz:A 286 239 0.2682 0.2448 0.2929 3.45e-20 4uto:A, 4uto:B, 3zka:A, 3zka:B, 3ztt:A, 3ztt:B, 3ztt:C, 3ztt:D
14 4irm:C 236 254 0.2644 0.2924 0.2717 8.27e-19 1xvl:C
15 4k3v:A 253 218 0.2222 0.2292 0.2661 9.15e-19
16 8svc:A 270 272 0.2682 0.2593 0.2574 1.61e-16
17 1toa:A 277 275 0.2452 0.2310 0.2327 6.27e-15 1toa:B
18 5z2k:A 270 267 0.2490 0.2407 0.2434 6.40e-13 5afs:A, 4cl2:A, 4udo:A, 5zha:A
19 2xy4:A 267 251 0.2107 0.2060 0.2191 3.79e-10 4bbp:A, 2ogw:A, 2ogw:B, 2osv:A, 2osv:B, 2prs:A, 2prs:B, 2ps0:A, 2ps0:B, 2ps9:A, 2ps9:B, 7rcj:A, 7rcj:B, 7rcj:C, 7rcj:D, 7rcj:E, 7rcj:F, 2xqv:A
20 5w57:A 284 248 0.2184 0.2007 0.2298 2.13e-08 5kzj:A, 5kzj:B, 5w56:A, 5w56:B, 5w57:B
21 6nsi:A 285 181 0.1571 0.1439 0.2265 4.91e-08
22 6xpn:B 259 235 0.2069 0.2085 0.2298 1.85e-07 6xpn:A
23 3mfq:A 278 278 0.2222 0.2086 0.2086 3.45e-06 3mfq:B, 3mfq:C
24 7vd5:20 155 14 0.0421 0.0710 0.7857 0.99 7vd5:40, 7vd6:20
25 4v8p:AN 143 63 0.0766 0.1399 0.3175 1.5 4v8p:DN, 4v8p:FN, 4v8p:HN
26 4v4s:AY 365 105 0.1073 0.0767 0.2667 2.1 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
27 1v33:A 346 75 0.0881 0.0665 0.3067 2.3 1v34:A
28 6km9:B 845 82 0.0843 0.0260 0.2683 2.4 6km9:A, 6kma:A, 6kma:B, 6kma:C, 6kma:D
29 1nyq:B 645 43 0.0575 0.0233 0.3488 2.8 1nyq:A, 1nyr:A, 1nyr:B
30 2f3o:A 773 35 0.0536 0.0181 0.4000 4.2 2f3o:B
31 3lzw:A 329 43 0.0613 0.0486 0.3721 5.3 3lzx:A, 3lzx:B
32 4bfr:A 855 62 0.0575 0.0175 0.2419 6.1 4bfr:B
33 5oj7:A 286 49 0.0498 0.0455 0.2653 7.4 5ojn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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