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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQD
NKADVILKYNADEARSLKAYGELPEHAKI

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1d7q:A 143 109 1.0000 0.7622 1.0000 1.80e-76 7a09:G, 4kzy:n, 4kzz:n, 8oz0:G, 8p03:j, 8p09:j, 8pj1:q, 8pj2:q, 8pj3:q, 8pj4:q, 8pj5:q, 8pj6:q, 8ppl:Iq, 7qp6:q, 7qp7:q, 7syq:A, 7syr:A, 7sys:A, 7syv:A, 7syw:A, 7syx:A, 7tql:4, 6yal:j, 6yam:j, 6ybw:q, 6zmw:q, 6zp4:G
2 6fyx:i 121 99 0.6239 0.5620 0.6869 2.43e-47 8cah:i, 8cas:A, 6fyy:i, 6gsm:i, 6gsn:i, 3j80:i, 3j81:i, 3jam:i, 3jap:i, 8rw1:i, 8s8d:i, 8s8e:i, 8s8f:i, 8s8g:i, 8s8h:i, 8s8i:i, 8s8j:i, 4uer:0, 6zce:i, 6zu9:A
3 4bts:A0 99 98 0.6147 0.6768 0.6837 7.07e-44 4bts:B0, 4bts:C0, 4bts:D0
4 7ase:w 147 85 0.3578 0.2653 0.4588 4.45e-17
5 5jb3:6 95 86 0.2477 0.2842 0.3140 5.58e-10 5jbh:6, 6sw9:6, 6swc:6, 6swd:6, 7zag:6, 7zah:6, 7zai:6
6 6zxg:j 116 88 0.2294 0.2155 0.2841 1.09e-05 6zxf:j, 6zxh:j
7 6jmv:A 256 23 0.1009 0.0430 0.4783 1.3 8bst:A, 8bst:B, 8bst:C, 8bst:D, 8bsu:A, 8bsu:D, 8bsu:B, 8bsu:C, 8bsu:E, 8bsu:H, 8bsu:F, 8bsu:G, 4e0w:A, 6f28:A, 6f28:B, 6f29:A, 4g8n:A, 4igr:A, 6jmv:B, 4mh5:A, 5nf6:B, 5nf6:A, 4nwc:A, 4nwd:A, 5o4f:B, 5o4f:A, 3s9e:A, 3s9e:B, 3u92:A, 3u92:B, 3u93:A, 3u93:B, 3u94:A, 3u94:B, 3u94:C, 3u94:D
8 7kmq:B 754 35 0.1101 0.0159 0.3429 2.6 7kmq:A
9 3huj:A 275 48 0.1468 0.0582 0.3333 3.0 4en3:C, 3huj:C, 4lhu:A, 4mng:A, 4mng:C, 4mq7:A, 2po6:A, 2po6:E, 3sdx:A, 3sdx:C, 8sgb:A, 8sgm:A, 8sos:A, 8sos:E, 3tzv:C, 3u0p:A, 3u0p:C, 6v7y:A, 6v7z:A, 6v7z:C, 6v80:A, 6v80:F, 3vwj:A, 3vwk:A, 4wo4:A, 4ww2:C, 4wwk:C, 1zt4:A
10 1nui:A 242 66 0.1560 0.0702 0.2576 3.4 1nui:B
11 2a8j:B 313 35 0.1101 0.0383 0.3429 4.3 2a8j:A, 2a8m:A
12 5lth:A 334 32 0.1101 0.0359 0.3750 5.3 5lte:A, 5lti:A
13 6n9x:B 500 66 0.1560 0.0340 0.2576 6.0 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
14 8fac:A 1377 60 0.1376 0.0109 0.2500 7.1 8e04:A
15 8e05:A 1749 60 0.1376 0.0086 0.2500 7.1 8e05:B, 8e06:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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