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BioLiP
>protein
KFYVREPPNAKPDWLKVGFTLGTTVFLWIYLIKQHNEDILEYKRRNG

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xtc:f 47 47 1.0000 1.0000 1.0000 1.49e-30 5xtd:f, 5xth:f, 5xti:f, 5xti:Bf
2 8bso:H 219 24 0.1915 0.0411 0.3750 1.1 8bjz:H, 8bjz:A, 8bso:C, 6ug9:H, 6ug9:A, 6ug9:J
3 3fn0:H 221 24 0.1915 0.0407 0.3750 1.5
4 3bfm:A 230 16 0.1702 0.0348 0.5000 2.6
5 7nfc:A 3562 41 0.2340 0.0031 0.2683 3.4 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
6 7t0l:G 218 22 0.1915 0.0413 0.4091 4.1 5eor:H
7 3aqz:B 102 31 0.2553 0.1176 0.3871 4.2 3aqz:A
8 8k1l:A 979 25 0.2128 0.0102 0.4000 4.7
9 6ahr:B 774 16 0.1489 0.0090 0.4375 5.4 6ahu:B
10 1dhk:B 195 18 0.1489 0.0359 0.3889 5.6
11 4zke:A 473 37 0.2340 0.0233 0.2973 8.5 4zkd:A
12 8tmy:A 220 21 0.1915 0.0409 0.4286 8.6 8tmy:C, 8tmy:H
13 8p5r:C 1109 21 0.1915 0.0081 0.4286 9.7 6i2q:A, 6i2r:A, 6i2r:C, 6i2s:A, 8p5r:A, 8p5r:B, 8p5r:D, 8p5r:E, 8p5r:F, 6r2b:A, 6r2b:D, 6r2c:A, 6r2c:B, 6r2c:C, 6r2c:D, 6r2d:A, 6r2d:B, 6r2d:C, 6r2d:D, 2xt6:A, 2xt6:B, 2xta:A, 2xta:B, 2xta:C, 2xta:D, 2y0p:D, 2yic:A, 2yic:B, 2yic:C, 2yic:D, 2yid:A, 2yid:B, 2yid:C, 2yid:D, 3zhq:A, 3zhq:B, 3zhq:C, 3zhq:D, 3zhr:A, 3zhr:B, 3zhr:C, 3zhr:D, 3zhs:A, 3zhs:B, 3zhs:C, 3zhs:D, 3zht:A, 3zht:B, 3zht:C, 3zht:D, 3zhu:A, 3zhu:B, 3zhu:C, 3zhu:D, 3zhv:A, 3zhv:B, 3zhv:C, 3zhv:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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