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BioLiP
>protein
KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5coc:A 124 51 0.9259 0.4032 0.9804 1.23e-29
2 8cpl:C 499 54 0.9259 0.1002 0.9259 3.35e-28 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
3 5cbn:A 176 52 0.9074 0.2784 0.9423 4.08e-28
4 5h75:D 225 49 0.8704 0.2089 0.9592 2.61e-26 5h75:A, 5h75:B, 5h75:C, 1p3y:1
5 5ewx:B 214 49 0.8333 0.2103 0.9184 2.32e-25 5ewx:A
6 6fgo:F 67 64 0.8519 0.6866 0.7188 5.59e-22 6fgo:E, 6fgo:G, 6fgo:H
7 4bxl:A 46 43 0.6111 0.7174 0.7674 5.34e-17 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
8 5h7d:E 113 50 0.6667 0.3186 0.7200 6.82e-17 5h7d:F, 5h7d:G, 5h7d:H, 5h7d:K, 5h7d:L, 5h7d:O, 5h7d:P
9 7rxc:B 439 50 0.6481 0.0797 0.7000 1.79e-16 7rxd:B
10 8jxr:C 341 50 0.6481 0.1026 0.7000 1.96e-16
11 8h4r:A 287 36 0.2778 0.0523 0.4167 0.52
12 8i23:C 1164 22 0.1852 0.0086 0.4545 1.9 8i24:C
13 6nrq:B 104 25 0.1667 0.0865 0.3600 1.9
14 1ukw:A 379 33 0.2222 0.0317 0.3636 2.2 1ukw:B
15 4oge:A 977 35 0.2407 0.0133 0.3714 2.2 4ogc:A
16 1b9h:A 384 27 0.1481 0.0208 0.2963 4.7 1b9i:A
17 3pvs:D 424 48 0.3333 0.0425 0.3750 5.5 3pvs:A, 3pvs:B
18 5ysw:A 374 22 0.1852 0.0267 0.4545 7.9 5ysm:A
19 2o56:A 392 36 0.1852 0.0255 0.2778 8.6 2o56:B, 2o56:C, 2o56:D, 2o56:E, 2o56:F, 2o56:G, 2o56:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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